<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07638

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMSEHTAKRQRLDSTGRFSPASPPFDVVAKAGGHTKTTIHPRTPTSPPYPSMSSQVNGGPAMGSAAAHSDGSPPASTAMSQTLSQSTTSASIPHPFPTPASTAGHYSSATIDSDGDALMGDNADDEAAQPGHHRRSNHDREAQPDWSKNWSEKGGLKAAEGVKGDQLYKVAVSRCEASKPHASQNLFRLYSLEGLARSVARTDAVTGEKINKLRKSYEGHIKAMQIAGKPKAQKMEGVFSMPVWIPDEEWKVLKVQGKEMDKALNPAQTALDPGFGSLLDSAFAGMTTGTLPTADANRYRTYIGTDDVVKPKAQDGPPHRPSPHPSATPTPGNSAVGRGVTRPERSGSKRHYTDAAFQGYGEGYNDDFGADSTGGEDNAQGNMAKRRKLQFERTSHSVEVGGARR
Length404
PositionHead
OrganismStagonospora sp. SRC1lsM3a
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Pleosporomycetidae> Pleosporales> Massarineae> Massarinaceae> Stagonospora> unclassified Stagonospora.
Aromaticity0.06
Grand average of hydropathy-0.826
Instability index45.45
Isoelectric point9.04
Molecular weight43030.02
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364151

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07638
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     116.71|      23|      23|      19|      41|       1
---------------------------------------------------------------------------
   19-   38 (29.39/11.30)	....PASPPFDVVAK...AGGH.TKTTI
   39-   64 (33.43/13.88)	HPRtPTSPPYPSMSS.qvNGGP.AMGSA
   65-   91 (26.44/ 9.42)	AAHsDGSPPASTAMSqtlSQST.TSASI
   93-  110 (27.45/10.06)	H.......PFPTPAS...TAGHySSATI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.63|      24|      84|     273|     296|       2
---------------------------------------------------------------------------
  273-  296 (41.87/20.16)	GFGSLLDSAFAGMTTGTLPTADAN
  358-  381 (44.76/21.97)	GYGEGYNDDFGADSTGGEDNAQGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.35|      27|      80|     216|     245|       3
---------------------------------------------------------------------------
  216-  245 (42.58/28.90)	YEGHIKAMQIAgKPKAQkmEGVFSMPVWIP
  298-  324 (53.77/26.44)	YRTYIGTDDVV.KPKAQ..DGPPHRPSPHP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07638 with Med19 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ADANRYRTYIGTDDVVKPKAQDGPPHRPSPHPSATPTPGNSAVGRGVTRPERSGSKRHYTDAAFQGYGEGYNDDFGADSTGGEDNAQGNMAKRRKLQFERTSHSVEVGGARR
2) MSEHTAKRQRLDSTGRFSPASPPFDVVAKAGGHTKTTIHPRTPTSPPYPSMSSQVNGGPAMGSAAAHSDGSPPASTAMSQTLSQSTTSASIPHPFPTPASTAGHYSSATIDSDGDALMGDNADDEAAQPGHHRRSNHDREAQPDWSKNWSEKGGLKA
293
1
404
157










Molecular Recognition Features






MoRF SequenceStartStop




1) AKRQRLDSTGRF
2) FDVVAKAGGHTKTTIH
3) NMAKRRKLQFERTSHSVEVGGA
4) RYRTYI
6
24
381
297
17
39
402
302