<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07635

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMDATYNMDVDDLFGDSEHVNLQAINTAPPLKGLARRIDELGASGCCQKVAWSKNGCVALISPDGFTVNLKVFSRDPDSGTWDLRKDIPLEVPQGREQFPFVHLSWSHLGNDLAVMDSAGRVMLFSCAMALDRMHHIRAELAHPEAEVDGVVGMHWLAIHPYEAKNHIAWSATREGSKWNWHIKSHMFNDAFHPVDGKTSLIYLKRHGELKLRFQQNDSSWQEVSAQLGPLLSTKEPFTHAAFASNSDNTLLLAAYDVARRLHLYRVEITWNVPSDKRNASAGPFEKPGLHASLLSIDGNCGPVTFSAGDLSSDTEPRIPAAAQLTHLDFMPVTPEEGDGSLPTIQAVFCRPPNIGLFDQMQVQENPHSVLVRWEVHHKQQNQLHPSLDQVTSKKKSIGSISPQSIFKLQRLPDFSLHSVVLTVFPLWYNMVLALHYSDGTIEFRKRTTLETIMPDGNTNVMTSLIQAGFAFSHAEPALHIAFSPSHCIAACMQQDGTTKLRSMEFQHGILGSDDTDERHSAALAAIVLQSSSAANQYFSSDDIFSLLGPLTEKRTNDFIDLLFDGLQVNIDCGIDDMSSQHFVLLGRSPFFVKTLSAMNLLGLQGTTNRTLTSKIAWIVLNIKYVTQILTTITRMHGAIEKTSLRPEVVPQFIGICRWIMHFMAYLLDELFTLGREVQDLPSQSLTREMLEQKIHAINKPAVLILLSAFPRAMMKLWAQPIAWVKRSAETYANPNQATPAPEIRKLYTPLHSAVNELPFEWRWFEMLVTDTHNQVRAAYKRANATDAQRNHYERELMLGRIPDILVPIAKRLITDTLWNEQANNGCLADKLDMGRLMFFDTTWLGFQESKRAAEWHDTHVVDVCQKMIIRGTGTQQHPSATIVQQSRGRSDSIQSTNGETAPGKKKGQLRRCTRCSAYMEDVMQGLPGYTQHHASWLMGVAKHCVCGNSWMLAPEKPRAK
Length960
PositionTail
OrganismStagonospora sp. SRC1lsM3a
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Pleosporomycetidae> Pleosporales> Massarineae> Massarinaceae> Stagonospora> unclassified Stagonospora.
Aromaticity0.08
Grand average of hydropathy-0.253
Instability index46.11
Isoelectric point6.60
Molecular weight107656.76
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364149

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07635
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.81|      42|      75|     106|     152|       1
---------------------------------------------------------------------------
  106-  152 (62.65/48.59)	SHLGNDlAVMDSAGRVMLfscaMALDRMHHIRAELAHPEA...EVDGVVG
  184-  228 (68.16/38.81)	SHMFND.AFHPVDGKTSL....IYLKRHGELKLRFQQNDSswqEVSAQLG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     214.66|      66|     333|       7|      77|       2
---------------------------------------------------------------------------
    7-   77 (105.25/77.03)	MDVDDLFGDSEHVNLQAINTAPPLKGLARRIdELGASGCCQKVAW..................SKNGCVALISPDGFtvnLKvFSRDPD
  330-  413 (109.41/64.88)	MPVTPEEGDGSLPTIQAVFCRPPNIGLFDQM.QVQENPHSVLVRWevhhkqqnqlhpsldqvtSKKKSIGSISPQSI...FK.LQRLPD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.41|      37|      38|     617|     653|       4
---------------------------------------------------------------------------
  617-  653 (63.56/49.14)	WIVLNIKYVTQILTTITRMHGAIEKTSLRPEVVPQFI
  658-  694 (64.85/50.30)	WIMHFMAYLLDELFTLGREVQDLPSQSLTREMLEQKI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.17|      20|     317|     434|     460|       5
---------------------------------------------------------------------------
  434-  458 (30.51/32.39)	LHysdgtIEFRKRTTLETIM.PDGNT
  478-  498 (34.66/16.40)	LH.....IAFSPSHCIAACMqQDGTT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.62|      21|      37|     541|     562|       6
---------------------------------------------------------------------------
  541-  562 (33.95/26.38)	DDI....FSLLG..PLTEKrTNDFIDLL
  575-  601 (28.67/16.74)	DDMssqhFVLLGrsPFFVK.TLSAMNLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.89|      14|     333|     416|     430|       7
---------------------------------------------------------------------------
  416-  430 (24.37/15.52)	LHSVVlTVFPL...WYNM
  750-  766 (23.53/10.74)	LHSAV.NELPFewrWFEM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.53|      38|     446|     243|     287|       8
---------------------------------------------------------------------------
  243-  287 (53.27/53.39)	ASNSDNTL.LLAAYDVArRLHLYRVEITWnvpsDKRnaSAGPFEKP
  696-  734 (65.26/41.55)	AINKPAVLiLLSAFPRA.MMKLWAQPIAW....VKR..SAETYANP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.67|      17|     198|     305|     321|      10
---------------------------------------------------------------------------
  305-  321 (31.58/18.48)	FSAGDLSS.DTEPRIPAA
  505-  522 (28.09/15.70)	FQHGILGSdDTDERHSAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.92|      16|     829|      90|     105|      11
---------------------------------------------------------------------------
   90-  105 (32.10/17.31)	EVPQGREQFPFVHLSW
  921-  936 (32.82/17.84)	DVMQGLPGYTQHHASW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07635 with Med16 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QQHPSATIVQQSRGRSDSIQSTNGETAPGKKK
875
906










Molecular Recognition Features






MoRF SequenceStartStop




NANANA