<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07616

Description Uncharacterized protein
SequenceMSGYDPNANNSFFGFTGFNPGLAAAQQQQGGPQAAFMQQLQQQHQQVQAQQQQQQQQQQQQQQQQQGMLGGFGGMQQQPHQQMNTGIPNMGQAGMGNPGPVSTGVAMMQQQAQPQQQQQQQQQQQPQIQQQQPQMNTAQLMTVITQNFPTLSQQQVQSLLANPAQLQAIWHRFQQQQALKNAQMAQQGGGGGQPQQQQQQQQPGPQHIQQQQQQQQQQQQQQQQQQQALQRQQQLAQGLNAGAVSGAQVATAASAASQQAAMNRNNPSGSNLGQQVAQQQQQQQQQNRPQPQQQQPNQSQQPQQQQQQPMGMSNVPPQLITQLINRAKLGQLTQPEWAQLKMVLSGPQGAVVKEQLQQFQQQQQHLQQQQQQQQQQQQQQQQQQPNAQQDGRSQQPQSQQQAQGQQQQQQRPDQSGGAQNFGGVQAPGQQGQPQGQGQHDFAQGTPKAGQQALQQMGQPSGPQGQMAGRTTMNGMSMSAQDIINIMGKKAQDLEAAINSGNMNPTERDTTVNELAQLRRRQQTILASLSAQAMAQQSGGQVSQQQQQAQQLQQGQQPGQHQQPGRPLSQAGIGGQQSQGGPGQPALQAVAGQMRGQMGLPGAGPQANFSPMMQNMSPLSGQAGLRPMSQPQQSTPQQQSAVPLPQQPGVNGAVPSPQQVSNGLNGAGGARTNLHVREQFRAVLQQFLITRNTPVQGGPPVVDGKDVDLHALYFAVQSYGGMVAVNEQKNWPMVVVALGLAPIHSPQAQNLAMPLQKVYANFLAHFEEFYNAASSAGAQGQAVLLRMAQQQQQAQQQKQQQQQQQQHQQQQQQQQYQQQQQQQKTGVLPSPQLAAANLMANSGMMPNFPPPPPITAEQLSKLGMTQAEYHQAWLMRQQQAFQQQQQQLMQQQQQQQPQVSGMQAQQAGMMGAAGSRLPGQPGGVQNGQGQQQQQQQQQQQQLQHQQANRPGGQPQAQQLGANGMMMPNAASQPGQQAPGGMSFPPGGSPGMNIPGSAGGIMGRAPGGMPGMPGGGMMGAVGGQGSAMGMNMGMGGMGMMGGPGGVAGLPGGGPGLPGGPASVPGMMPMGMGGMGVMGPGGLMAGQPMPMGMPMQRPGMGGAGGPGRPGMPGMPGGGMAGPMGLPGQLPPGAGQAVQQQQGQAQAAQQSQAQLQAQALADAQAAQNAVMQAQAQSLLALPIPLLEERLMHAKRFLQQIDHEIAANKPPGQPKPNVSEEERREVYNAVKELLPLHSDVGHMLPAYAVIHPGSSASDPVRRIKYMGALFREQVEAESRQQVLVSVEDLGRLRVQYQRLVNTMRQHNSVLVDRIMQLLRAQENKQRVEELGQGGAGPQSQQAQPTGEQQQQQQQQAPGPPTRTLSTGPSGVVPAELQAPHGIKRGLRVEDLKLQPNKRAKTGSKEVAGTPGKGMANANAASGSGMAVSPQGSTSAEDSPKMGAATTGAAKGKKALPKSKAPAGKKGKAAAAAAAAAAAAAAASTNASAEDKKGSASTPSDKTAVDSKADTTKSELYAGAGLGFSTVGGGAASTPASSVVAKTPAPVDQAMRAEAEAAAAKKRDADAAQQDLAGFTETTLQDLLTAASGGGGGGGGSAGGGGADTGAPSSFAVDGDKQAMDTLAQLLNSGSGYEWTNAAGAQGSFLGGAADPNGRPSVAPVPVPPSGNNSFGGMSGMDSMDTLLGGGPAGLADASNLEDADDNLFEFIDASFFSVADSLPEEAGSTGPTGSGGGLAGGSGGPSTSGSGSGSGLGTGSTTDESLTKTPELINSSRLTNMSGSSSSLGSSSVATRNSGGGNPALGGRVSSILSAYGMGGPLSASPGDFSSSDEGEPSPPDGQPIVGRMGQQQGGPKAAQTGADADGAAGGGGQGAAEDGSATKVPLEPVKIATDFWSNMLATDDTSWALFS
Length1903
PositionTail
OrganismTilletia controversa (dwarf bunt fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Exobasidiomycetes> Tilletiales> Tilletiaceae> Tilletia.
Aromaticity0.03
Grand average of hydropathy-0.729
Instability index67.24
Isoelectric point8.28
Molecular weight197453.65
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
DNA binding	GO:0003677	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07616
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|    1281.06|     157|     157|      76|     232|       1
---------------------------------------------------------------------------
    7-  173 (252.31/36.89)	.......NANN..SFFG.......FTG...F....NPGlAAAQ...........QQQGGPqaafmQQLQQQHQQvQAQQQQQQQQQQQQQQQQ.qgmlggfggmQQQ..PH.Q........QM..NTG.IPNMG.Q.....AG....MGNPGPVST...............GVAMMQQQA.QPQQQQ..QQQ.QQQQPQIQQ....Q......Q.PQMN....TAQLMTVITQNF.PTLSQQQVQSLL..ANPA........Q.L....QAIWHRF
  174-  338 (236.86/33.88)	QQQQALKNAQM..AQQG.......GGG...G....QPQ.QQQQ...........QQQPGP.....QHIQQQQQQ.QQQQQQQQQQQQQALQRQ.qqlaqglnagAVS..GA.Q........VA..TAA.SAASQ.Q.....AA....MNRNNP..S...............GSNLGQQVA.QQQQQQ..QQQ.NRPQPQQQQpnqsQ......Q.PQQQ....QQQPMGM..SNV.P...PQLITQLI...NRA........K.LgqltQPEWA..
  339-  495 (199.41/26.60)	Q....LK...M..VLSG.......PQG...AvvkeQLQ.QFQQ...........QQQ.........HLQQQQQQ.QQQQQQQQQQQQPNAQQD.........grSQQ..PQsQ........QQ..AQG.QQQQQ.QrpdqsGG....AQNFG...................GVQAPGQQG.QPQGQG..QHDfAQGTPKAGQ....QalqqmgQ.PSGP....QGQMAGRTTMNG.MSMSAQDIINIM..GKKA........QdL....EA.....
  496-  686 (161.52/19.23)	....AINSGNMnpTERD.......TTVnelA....QLR.RRQQtilaslsaqamAQQSGG.....QVSQQQQQA.QQLQQGQQPGQHQ..QPGrplsqagiggqQSQggPG.QpalqavagQMrgQMG.LPGAGpQ.....ANfspmMQNMSPLS................GQAGLRPMS.QPQQST..PQQ.QSAVP..LP....Q......Q.PGVN....GA..V........P..SPQQVSNGLngAGGArtnlhvreQ.F....RAVLQQF
  777-  924 (189.64/24.70)	AQGQAVL.LRM..AQQ..........Q...Q....QAQ.QQKQ...........QQQQQQ.....QH.QQQQQQ.QQYQQQQQQQKTGVLPSP...........QLA..AA.N........LM.aNSGmMPN...............FPPPPPITAeqlsklgmtqaeyhqAWLMRQQQAfQQQQQQlmQQQ.QQQQPQVSG....M......Q.AQ......QAGMMGAAGSRL.P.............GQPG........G.V....Q......
  925- 1022 (138.98/14.85)	.......NGQ...GQQ.....................Q.QQQQ...........QQQ........QQLQHQQAN.RPGGQPQAQQ..................................................................................lganGMMMPNAAS.QPGQQA..PGG.MS.FPP..G....G......S.PGMNipgsAGGIMGRAPGGM.PGMPG....GGM................M....GAVGGQ.
 1023- 1108 (102.35/ 7.73)	..GSAMG.MNM..GMGGmgmmggpGGV...A....GLP.GGGP...........GLPGGP.....ASVP..........................................................G.MMPMG.M.....GG....MGVMGP..G...............GLMA....G.QPMPMG..M...........P....M......QrPG..........MGGAGGPGrPGM.....................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     327.98|      77|      77|    1412|    1488|       2
---------------------------------------------------------------------------
 1413- 1488 (115.60/35.32)	.NAASGS..GMAV.SPQG..STSAE..DSPKMGAATTGAAKGKKALP......KSKAPAGKKGKAAAAAAAAAAAAAAASTNASAEDKKG
 1489- 1568 (82.51/22.62)	SASTPSD..KTAVdSKAD..TTKSElyAGAGLGFSTVGG..GAASTPassvvaKTPAPVDQ....AMRAEAEAAAAKKRDADAAQQDLAG
 1578- 1633 (75.41/19.90)	LTAASGG..G....GG.G..GGSAG..G....GGADTGA.......P......SSFAVDGDKQAMDTLAQLLNSGSGYEWTNAA......
 1634- 1688 (54.47/11.86)	..GAQGSflGGAA.DPNGrpSVAPV..PVPPSGNNSFGGMSGMDSM.......DTLLGGGPAGLADA.......................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.51|      15|      15|    1718|    1732|       5
---------------------------------------------------------------------------
 1115- 1129 (28.77/ 7.94)	GMAGPMGLPGQLPPG
 1718- 1732 (29.74/ 8.53)	GSTGPTGSGGGLAGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.66|      22|      26|    1275|    1300|       7
---------------------------------------------------------------------------
 1281- 1302 (37.22/18.34)	VEDLGRLRV.....QYQRLVNTMRQHN
 1322- 1348 (29.45/ 6.03)	VEELGQGGAgpqsqQAQPTGEQQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.79|      14|      19|    1838|    1853|       8
---------------------------------------------------------------------------
 1838- 1853 (23.17/11.38)	GRMGqqQGGPKAAQTG
 1858- 1871 (26.62/ 8.04)	GAAG..GGGQGAAEDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.93|      11|      19|    1370|    1380|      10
---------------------------------------------------------------------------
 1370- 1380 (19.87/10.55)	ELQAPHGIKRG
 1387- 1397 (19.06/ 9.77)	KLQPNKRAKTG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07616 with Med15 domain of Kingdom Fungi
Unable to open file!