<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07608

Description Uncharacterized protein (Fragment)
SequenceMASAGKDMFSRHWRSQRFPSLSSQEMQRAMIMIHMHHGRGWTTSCLTSWAGPSTRPLSSSIPPSHSACIDCGTSEATSPSSKDQLSTRHSSQQNHSRRSSESHPRSSPSPSSPTHEGGADSKEEHGKTVSISVQDAESLKTAMLQRVGNAHFATYFLHNVALLIQYQTSQRKSQLEQQSAIAQSQVQILSSSQQQQQNTSRTESTPEPSTSAPAQQHQEPYFDPKILGLSEVFPDPSSSSQNQQQHASHNIDDDDEEEQRNEDNSQDQQQERDQPVSDESNIPIDQTAFPALATTRATLLRTSSILRSGSLSIRRVAGSSPSTSTSEQTRWTGLAALNTSSDASWKLAPAPENVGVGSAVWWGGLSAREDGEGAGARDAWVGYGLPEVQPRFRRNAMAYFADEETSTLSAQSIPSTTPAAGTGPHVFLRRPGRRLRLRLISPDGIEHVGDSDARGKRLGEELMEGGKSAGIANVLREAQEELLDEELWSNLLAQVQNTSAIVIRSSSSQPSLTKPPQSSAGGTSTVLSTTTTTTPVSTPAPQLPPPDALVVGVEDEKADGKNRKRKRRRFGALDAVAALSEAEKIEVRLGGGWKLVLEMGRKELSASIPSDRQEGSEPTSPSSALPRILVAYLRLSLLRSIPRQASIDRGKSQAQLEREAAAASSKRGVGAYELSGSKLKQQQQQQQQQQQQQQQQQQQQQAAVAAAVGGEKSDAGKEKEKGLGRGTNRESYLDPVLGLFRYATFIADVELVLDALSRRGADADGEQTSTSKQSEGKKGSRIWYRLSPLASLVDTSAWLRTLLDESPQPG
Length810
PositionHead
OrganismTilletia controversa (dwarf bunt fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Exobasidiomycetes> Tilletiales> Tilletiaceae> Tilletia.
Aromaticity0.04
Grand average of hydropathy-0.738
Instability index69.32
Isoelectric point6.53
Molecular weight87781.72
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07608
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     202.92|      47|     101|      76|     122|       1
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    6-   72 (43.57/14.83)	......KDMFS.RHWR.....................SQRFPSLSSQemqramimihmhhgrgwttscltswAGPSTRPLSSSipPSH...SACIDCG
   76-  122 (84.58/35.78)	ATSPSSKDQLSTRHSS.....................QQNHSRRSSE.........................SHPRSSPSPSS..PTH...EGGADSK
  128-  184 (29.41/ 7.60)	TVSISVQDAESLKTAMlqrvgnahfatyflhnvalliQYQTSQRKSQ.........................LEQQSAIAQS................
  189-  225 (45.37/15.75)	.........LSSSQQQ.....................QQNTSR..TE.........................STPE..PSTSA..PAQqhqEPYFDPK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     383.17|      99|     101|     419|     518|       2
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  317-  417 (107.80/63.64)	.AGSS...PSTSTSEQTRW........TG.LAALNTSSDASWKLapapenvgvGSAVWWGGLSA......REDGE.GAGARDAWVGYgLPEVQprfrrNA.MAYFA.dEETSTLSAQSIPSTT
  419-  518 (157.02/100.60)	AAGTG...PHVFLRRPGRRLRLRLISPDG.IEHVGDSDARGKRL.........GEELMEGGKSAGIANvLREAQE.ELLDEELWSNL.LAQVQ.....NT.SAIVI..RSSSSQPSLTKPPQS
  520-  621 (118.36/70.72)	AGGTStvlSTTTTTTPVSTPAPQLPPPDAlVVGVEDEKADGKNR.........KRKRRRFGALDAVAA.LSEAEKiEVRLGGGWKLV.LEMGR.....KElSASIPsdRQEGSEP..TSP...
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.90|      18|     444|     257|     274|       3
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  257-  274 (31.15/14.27)	EEQRNEDNSQDQQQERDQ
  680-  697 (31.74/14.66)	KQQQQQQQQQQQQQQQQQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07608 with Med17 domain of Kingdom Fungi
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