<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07547

Description Uncharacterized protein
SequenceMAEKQLIVVVEGTAAMGPHWQTILTEYLDKVIKSFCGYDSTTQKPSVPVEFSLVVFNAPGNYSACLVQRSGWTRDVDNFFQWLSAISFSGGGFSDVAISEGLAEALMMCTPLNGKQPHQNVDKQRHCILVAASNPFPLPTPVFRPQIPKLEQSENTESQKESRISDAETLAKFFPQLSVSLSVISPKQLPKLKAIYNAGKRNPRAADPPIDNVKSPYHLVLISENFIEARAALSRNGIAPLVSNHSPMKVDTTSVMKVDTSPVLPVSVSPPTSVPSANGSVMNRQPIIVGNVTPTIVKIEPTTVTSMVSGPAYPHVSSVPRAASQGVPTLQTSSPLSAPQEMIPTTETVPDLKPPVTGLSQPLRPLGPAAANVSILNNLSQARQVMNSAALAGGTSIGLQSMGGTHMAMHMSNMISSGMVSSVPPTQTVLSSGQSGMTSIAASGQPGMTSMAGTGALAGNAQVALNTNSGSFASASSNLSGNSNLGMSQPMGNTQGGVNMGQSVPVVSQANISSTQMAQNGIGMNTNMISGVSQSGISSANGTMMPTPGMGPQGQPGPQSLGMANNAAANMPIPSQASNAMQSAPSQSKYVRVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGGRQMASQGQVTSQGPPSMPGGGSYLS
Length729
PositionUnknown
OrganismDaucus carota subsp. sativus (Carrot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Apiales> Apiaceae> Apioideae> Scandiceae> Daucinae> Daucus> Daucus sect. Daucus.
Aromaticity0.05
Grand average of hydropathy-0.123
Instability index49.09
Isoelectric point9.25
Molecular weight76383.31
Publications
PubMed=27158781

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
DNA binding	GO:0003677	IEA:EnsemblPlants

GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
jasmonic acid mediated signaling pathway	GO:0009867	IEA:EnsemblPlants
positive regulation of defense response	GO:0031349	IEA:EnsemblPlants
positive regulation of flower development	GO:0009911	IEA:EnsemblPlants
positive regulation of transcription, DNA-templated	GO:0045893	IEA:EnsemblPlants
red, far-red light phototransduction	GO:0009585	IEA:EnsemblPlants
response to far red light	GO:0010218	IEA:EnsemblPlants
response to red light	GO:0010114	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07547
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     251.02|      48|      48|     398|     445|       1
---------------------------------------------------------------------------
  398-  435 (62.38/21.68)	..........................GL.QSMGGTHMAMHMSNMISSGMVSSVP.PT.QTVLSSGQS
  436-  469 (45.97/14.33)	GMTSIAASGQ...............pGM.TSMAGT............GALAG...NA.QVALNT.NS
  470-  517 (46.47/14.55)	GSFASASSNL..........sgnsnlGMsQPMGNTQGGVNMGQ........SVPvVS.QANISSTQM
  549-  579 (45.54/14.14)	GM...GPQGQ...............pGP.QSLG.......MANNAAANM..PIP........SQASN
  580-  641 (50.65/16.43)	AMQS..APSQskyvrvwegnlsgqrqG..QPVFITRLEGYRSASASETLAANWP.PTmQIVRLISQD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     139.22|      30|      67|     265|     294|       3
---------------------------------------------------------------------------
  179-  208 (24.06/ 7.65)	.VSLSviSPKQLPKLK.AI.....YNagkRNP.....RAADP
  212-  247 (32.23/12.64)	NVK.S..PYHLVLISENFIearaaLS...RNGIapLVSNHSP
  265-  294 (52.88/25.27)	PVSVS..PPTSVPSANGSV.....MN...RQPI..IVGNVTP
  335-  358 (30.04/11.31)	PLS.A..PQEMIPTTE.TV.....PD...LKPP..VTG....
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07547 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MVSGPAYPHVSSVPRAASQGVPTLQTSSPLSAPQEMIPTTETVPDLKPPVTGLSQPLR
2) NMISSGMVSSVPPTQTVLSSGQSGMTSIAASGQP
3) SGSFASASSNLSGNSNLGMSQPMGNTQGGVNMGQSVPVVSQANISSTQMAQNGIGMNTNMISGVSQSGISSANGTMMPTPGMGPQGQPGPQSLGMANNAAANMPIPSQASNAMQ
307
413
469
364
446
582










Molecular Recognition Features






MoRF SequenceStartStop




NANANA