<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07543

Description Uncharacterized protein
SequenceMSSTVNDSQQPPTEPSPSAILPVSAADSALVEASDNAELIAQDEAKLESQGGGEEEAAQMKSDDPMEEDAEAKAAVVFCIRLKQPRSNLLHKMSVPELCRKFSAVAWCGKLNAIACASETCARIPSSTANAPFWIPIHIVIPERPTECTVFNVIAVNLSDSPRDSVQFIEWSPAACPRALLIANFHGRITIWTHPTQGTANLVKDASCWQRDYEWRQDIAVVTKWLSGMSPYRWLSSRSGSNTPTTLEEKFLSQQPQASAGWPNFLCVCSVFSSGSVQLHWSQWPPTQSGAASKWFCTSKGLLGAGPSGIMAADAIVTDSGAMHVAGVPIVNPSTVVIWEVTPGPGNGFQTIPKASVGSGVPPSLNPPSWDGFSPLAAYLFSWQEYLLLEAKQGKKQTEQEYSDMVALHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVITIVIVEGQYMSPYDPDEGPSITGWRVQRWESSVEHVVLHQIFGNPTSSLGGQAPMQTVWVTKVNKCIPTTSDIKTRQVAASGLCSDGRHTYDAGVDDENRVSFDPFDLPSDVRTLARIVYSAHGGEIAVAFLRGGVHIFSGPSFTPVDNYQINVGSAIASPAFSSTSCCSASVWHDTSKDSTILKIIRVLPPAVPSHQVKANTSTWERAIAERFWWSLMVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSTPHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPEPWQASGETLSGIDPEAMAVDPALVLSIQAYVDAILDLASHFITRLRRYASFCRTLASHAVTTGTGVGRSMVTSPTQSSASPAATPGSQGGTANSTGSTQMQAWVQGAIAKISSASDGVPTSNSTPINGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLPRFIGGAQRNADSGSQKNQPNGPGKVEEISSVPSKPASAMVRTEEGQASRVNQGVPGAKGAEEGPAGRSRLGSGNAGQGYAFEEVDDGPPVKVLFLILMDLCRRTSGLAHPLPISQVGSNNIQVRLHYIDGNYTVLPEVVEAALGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWCDPEDMGPLDDTAKMCNSSCSLDMQLPESCEVYHGAQGLWPRKRRMSERDAAFGLNTSLGLGAYLGIMGSRRDVVTALWKTGLEGAWFKCIRCLRQTSAFASPGANTPASQHEKETWWISRWVCGCPMCGGTWVRVV
Length1268
PositionTail
OrganismDaucus carota subsp. sativus (Carrot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Apiales> Apiaceae> Apioideae> Scandiceae> Daucinae> Daucus> Daucus sect. Daucus.
Aromaticity0.07
Grand average of hydropathy-0.147
Instability index46.87
Isoelectric point5.75
Molecular weight136223.49
Publications
PubMed=27158781

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IEA:EnsemblPlants
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07543
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     314.69|      77|      88|     261|     348|       1
---------------------------------------------------------------------------
  269-  346 (134.40/78.38)	CSVFSSGSVQLHWSQWPPTQSGAASKWFCTSKGLLGAGPSGIMAADAIVTDSGAMhVAGVPIVNPSTVVIWEVTPGPG
  355-  408 (74.41/27.04)	ASVGSGVPPSLNPPSWDGF.SPLAAYLFSWQEYLLLEAKQGKKQTEQEYSDMVAL.......................
  410-  472 (105.88/41.46)	CSPVSNFSAYV..SPEAAAQSAATTTW........GSGVTAV.AFDP..TRGGS..VITIVIVEGQYMSPYDPDEGPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     176.86|      57|      92|     851|     914|       2
---------------------------------------------------------------------------
  851-  910 (90.37/76.82)	PAATPGSQgGTANStGSTQMQAWVQGAIAKISS...................ASDGVPTSNSTPiNGPSSFMPI.SINTG
  946- 1022 (86.49/49.77)	PRFIGGAQ.RNADS.GSQKNQPNGPGKVEEISSvpskpasamvrteegqasrVNQGVPGAKGAE.EGPAGRSRLgSGNAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     163.54|      53|     329|     731|     791|       3
---------------------------------------------------------------------------
  731-  791 (74.44/58.24)	GTNAQEVRAMVLDMQARLLLDMlgkgIESALiNPSAL.VPEPwqaSGETLSGIDPEAMAVDP
 1063- 1116 (89.11/47.87)	GSNNIQVRLHYIDGNYTVLPEV....VEAAL.GPHMQnMPRP...RGADAAGLLLRELELHP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.36|      10|     574|     667|     682|       9
---------------------------------------------------------------------------
  667-  682 (16.66/20.36)	WWslmvgVDWWdAVGC
 1248- 1257 (26.70/12.11)	WW.....ISRW.VCGC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.37|      11|    1023|     240|     250|      12
---------------------------------------------------------------------------
  240-  250 (20.30/12.43)	GSNTPTTLEEK
 1235- 1245 (21.07/13.20)	GANTPASQHEK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07543 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GGAQRNADSGSQKNQPNGPGKVEEISSVPSKPASAMVRTEEGQASRVNQGVPGAKGAEEGPAGRSRLGSGNAGQGYAF
2) GVGRSMVTSPTQSSASPAATPGSQGGTANSTGS
950
835
1027
867










Molecular Recognition Features






MoRF SequenceStartStop




1) LIAQD
39
43