<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07541

Description Uncharacterized protein
SequenceMTETERADASTDWREITSPNGLARDKIAKESMNGTQEYDPASVSVLEASSPITDSTREAVTSTTPVAPVVAVTSLSACVESATTNAIGVQTPLHVGPTLDTTLGSSEVPLAVSNIETTSITESKTSITALEERTVDQEPVVYENKLEGKKAFIALLETSNIESDSTWDQAMKVIINDSRYAALKTLVERKQAFNEFLEQKKQQEAEERRAKQKKVVEGFKKMLEESQELTSSTRWSKAITIFEEDERFKAVERTKDRENLYEDYLVELGNKERAKALEEQKRNRMEYIEYLRSCEFIKASSQWRKVQDRLEADERCSRLEKIDRLEIFQEYLRDLEKEEEEQIKLRMEEARKAERRNRDDFRKLMEDHIAAGVLSVNTHWRDYCMKVKELPAYLAVSSNTSGATPKDLFEDVAEELEKQYLEDKARIKDAVKLGKVNLTSTWTIENLKDAVAETTGSHVVSDANWKREESFLRETFENYVLELKEKAREKERKRKEEKDRKDKDIKDREKRKAKERRDKERGKVKDRDKNDGSDSEKADREGSHGLEENRRSGRDRKHRKRHSNSADDLSFDEKDRDRSKSSYRHSSKKSKQGGVEISSAAFTKGGNFVVTTGVLSKAREMAARSVAAGDSGQGASQGEGSNTCPGESQAGGNEEVATDKVTKP
Length664
PositionUnknown
OrganismDaucus carota subsp. sativus (Carrot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Apiales> Apiaceae> Apioideae> Scandiceae> Daucinae> Daucus> Daucus sect. Daucus.
Aromaticity0.05
Grand average of hydropathy-1.017
Instability index45.73
Isoelectric point5.75
Molecular weight75437.92
Publications
PubMed=27158781

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats
>MDP07541
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     100.46|      17|      17|     492|     508|       1
---------------------------------------------------------------------------
  492-  508 (27.16/14.29)	RKRKEEKDRKDKDIKDR
  511-  527 (24.21/11.83)	RKAKERRDKERGKVKDR
  543-  559 (25.56/12.95)	SHGLEENRRSGRDRKHR
  560-  576 (23.53/11.26)	KRHSNSADDLSFDEKDR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     141.41|      43|      43|      80|     122|       2
---------------------------------------------------------------------------
   59-   85 (40.28/28.86)	AVTSTTP..VAPV..............V...A.VTSLSACVESATTN
   86-  128 (68.76/55.14)	AIGVQTPLHVGPTL.DTTLGSSEVPLAV...SNIETTSITESKTSIT
  129-  165 (32.36/21.57)	ALEERT.VDQEPVVyENKLEGKKAFIALletSNIESDS.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      28.39|      13|      19|     294|     310|       3
---------------------------------------------------------------------------
  294-  310 (11.83/16.95)	CEfiKASSQwrKVQDRL
  335-  347 (16.56/ 6.24)	LE..KEEEE..QIKLRM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     299.10|      64|      65|     202|     265|       4
---------------------------------------------------------------------------
  167-  223 (61.74/35.51)	..............WDQAMKVI...................INDSRYAALKTLVE...RKQAFNEFLeqkkQQEA...............EERRAKQKKVVEGFKKML
  224-  287 (78.65/47.34)	EE...SQELTSSTRWSKAITIF...................EEDERFKAVERTKD...RENLYEDYLvelgNKER...............AKALEEQKRNRMEY....
  288-  365 (33.83/16.00)	..................IEYLrscefikassqwrkvqdrlEADERCSRLEKI.D...RLEIFQEYL........rdlekeeeeqiklrmEEARKAERRNRDDFRKLM
  366-  438 (68.03/39.91)	EDhiaAGVLSVNTHWRDYCMKV...................KELPAYLAVSSNTSgatPKDLFEDVAeeleKQYL...............ED.KARIKDAVKLGKVNL
  445-  491 (56.86/32.10)	EN...LKDAVAETTGSHVVS.......................DANWKR.EESFL...RET.FENYV....LELK...............EKAREKE...........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.53|      32|      43|     586|     617|       5
---------------------------------------------------------------------------
  586-  617 (52.09/31.76)	SSKKSKQG.GVEISSAAFTKGGNFVVTTGVLSK
  631-  663 (51.44/31.28)	SGQGASQGeGSNTCPGESQAGGNEEVATDKVTK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.94|      19|      29|       1|      19|       6
---------------------------------------------------------------------------
    1-   19 (35.02/23.30)	MTETERAD.ASTDWREITSP
   32-   51 (28.92/17.95)	MNGTQEYDpASVSVLEASSP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07541 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AREKERKRKEEKDRKDKDIKDREKRKAKERRDKERGKVKDRDKNDGSDSEKADREGSHGLEENRRSGRDRKHRKRHSNSADDLSFDEKDRDRSKSSYRHSSKKSKQGGVEISSAAFTKGGNFVVTTGVLSKAREMAARSVAAGDSGQGASQGEGSNTCPGESQAGGNEEVATDKVTKP
2) MTETERADASTDWREITSPNGLARDKIAKESMNGTQEYDPASVSVLEASSPITDSTREAVTSTTPV
487
1
664
66










Molecular Recognition Features






MoRF SequenceStartStop




1) NEEVATDKVTKP
2) VLSKAREMAARSVAAGD
653
614
664
630