<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07538

Description Uncharacterized protein
SequenceMEGGIVEGGQAEQQTQPVERLNQAVQQQLNLESVKTRAISLFKAVSRILDEFDAIARANSLPKWQDVLSQFSMVNLELYNIVEDIKKVSKAFVVHPKNVNAQNATILPVMLSSKLLPEMEMDDNAKREQLLHGMHNLQLLSQIDKLKTRIDMIGAACESAEKVIADTRKAYFGTRQGPSLLPTLDKVQAAKIQEQESLLRSAVNQGEGLRIPGEQRQITSALPMHLVDVLNVGESSQTFSDGSGMYTKNNPTFSSNNITSQGNLIQASGSQLIGRTAASPGATGSTSFDNTTSPLPYANSPRSGANILNTPSPQQPSQLQQQQQRQKMMQLPQHQQQLLAQQQFRQSSVPGIGQANLLYYIKLFYPTPVPI
Length371
PositionHead
OrganismDaucus carota subsp. sativus (Carrot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Apiales> Apiaceae> Apioideae> Scandiceae> Daucinae> Daucus> Daucus sect. Daucus.
Aromaticity0.05
Grand average of hydropathy-0.418
Instability index57.94
Isoelectric point8.52
Molecular weight40802.84
Publications
PubMed=27158781

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
regulation of flower development	GO:0009909	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07538
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.42|      16|      18|     309|     326|       1
---------------------------------------------------------------------------
  309-  326 (27.10/13.72)	NTPSPQQpsQL.QQQQQRQ
  330-  346 (27.32/ 9.02)	QLPQHQQ..QLlAQQQFRQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.81|      15|      18|      37|      52|       2
---------------------------------------------------------------------------
   37-   52 (21.23/17.10)	RAISLFKaVSRILDEF
   57-   71 (28.59/18.34)	RANSLPK.WQDVLSQF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     158.54|      36|      39|     175|     212|       3
---------------------------------------------------------------------------
  115-  136 (24.25/11.29)	.....LLPEMEMDDNAK...REQLLHGMHN......
  138-  168 (35.50/16.92)	....QLLSQIDKLKT.RIDMIGAACESAEKVIADTR
  175-  210 (57.37/40.97)	RQGPSLLPTLDKVQAAKIQEQESLLRSAVNQGEGLR
  216-  245 (41.42/24.64)	RQITSALP.MHLVDVLNVGESSQTF....SDGSGM.
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07538 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GSQLIGRTAASPGATGSTSFDNTTSPLPYANSPRSGANILNTPSPQQPSQLQQQQQRQKMMQLPQHQQQLLAQQQFR
269
345










Molecular Recognition Features






MoRF SequenceStartStop




1) LLYYIKLFYPT
357
367