<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07536

Description Uncharacterized protein
SequenceMARHADHQLVIKTNHVTWLLTQIQHENVLHASSTNPKKAETAASKMLSLHKEGTSSDHSSPESILLEYISSCQTLQLLSQYTALRGVINAEHIHKAEQQKIEWLRQASEGESMIDYLNMDDRSTGMFWALSYVSEPHACDTVISWLKLGGTELLSASHLQSSDRITMMREVVPVPVSLLSGLSLHMRVILASQLEETMFSGKVVASIALVETYARLFLIAPHSLFRTHFSHLTIRYPSMLREPGPSLLLLELLNYRFLSLYRYVGKNKTLMYDTTKIIACLKRKRGDHRTFRLAENLCINLLLSLKEFFAAKKDQEGPTDITETLNRITIMSLAIAIKTRGVTDADHLLHLPPMIEQILATSQHTWSEKTLRHFPSLLRNNLIGRTDKRGIAIQAWKQAEKTVINQCTQLLPPDADPSYVETYISHSFPQHRQYLCAGAWILMHDHPEDINSANLALVLREISPEEVTANIYNLVDVIFHHLQMELQRQQPLQVYPGHYTAIPFYFAQLFSLDILLLALIDRDDDPHALSIVVSLLESPVLQEKIKVYIDNCGGPEHWLFSGTFKRGELQKALGNHSSWKERFPPFFDDIAARLLPVIPLIIYRLIENEAMDAADRVLQLYSTFVQYYPLHFTFVRDILSYFYDYLPRKLILRILNVLNFKKIPFSKCLLLHVNASNAVTSPPLEYFTVLLLGIVNNVIPPLNNLIYGPGGDVRVPDNNIPMSSQAGPSFAFKGRKAFYQIPDPGTYAQLILETAVIEILSLPGPASYIISTLVQIVVYKPPTLIQTSNCLHGISPSNLLSQSGYTSQQLPCMLIQACGLLLAQLPQEFHAQLYTKAAQVIKDSWWFVDGAASTGFDVSYALQDPTQASNDNTCTPVGNVVSLLHSFFSNLPQEWLEGTNLIIEHLRPVKSIAVLRIVFRIMSPLLPRVANSRSLFTKMLLMLLNVLVDVFGKDSQPSSPVEAADIIDIIDFLHHIILYEGQGGPVEATSKPRAETLAMFEKMLEKLRPDVQHLLSHLKTDVNSSIYAATHPELVQNAM
Length1039
PositionTail
OrganismDaucus carota subsp. sativus (Carrot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Apiales> Apiaceae> Apioideae> Scandiceae> Daucinae> Daucus> Daucus sect. Daucus.
Aromaticity0.08
Grand average of hydropathy0.027
Instability index46.07
Isoelectric point6.44
Molecular weight117099.10
Publications
PubMed=27158781

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07536
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.62|      25|      25|     455|     479|       1
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  455-  479 (39.31/24.29)	LALVLREISPEEVTANIYNLVDVIF
  482-  506 (46.31/29.95)	LQMELQRQQPLQVYPGHYTAIPFYF
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.51|      13|      18|     622|     639|       2
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  617-  629 (24.62/22.56)	VLQLYSTFVQYYP
  635-  647 (24.89/ 8.74)	VRDILSYFYDYLP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     163.12|      47|     310|     663|     713|       3
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  663-  713 (77.73/61.83)	IPFSKCLLLH......VNAsnavTSPP....LEYFTVLLLGIVNNVIPPLNNLIYGPGGDV
  936-  957 (23.75/ 9.14)	..................................FTKMLLMLLNVLVD.....VFGKDSQP
  970- 1022 (61.64/39.85)	IDFLHHIILYegqggpVEA....TSKPraetLAMFEKML....EKLRPDVQHLLSHLKTDV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.92|      10|      19|     232|     241|       5
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  232-  241 (18.56/10.60)	LTIRYPSMLR
  253-  262 (18.35/10.39)	LNYRFLSLYR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.20|      20|      22|     340|     359|       7
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  317-  336 (19.58/ 8.36)	.GPTDiTETLNRITIMSLAIA
  340-  359 (33.41/19.55)	RGVTD.ADHLLHLPPMIEQIL
  363-  382 (32.20/18.58)	QHTWS.EKTLRHFPSLLRNNL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07536 with Med23 domain of Kingdom Viridiplantae
Unable to open file!