<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07513

Description MYB DNA-binding domain protein
SequenceMSHGPPPLASHMSHHQMPQMPPRGGSSATRRHLPPQGIDTYQQQPVKKQSKWSAEEDTLIIELRGKGMKWDDVSKHLPGRSAISCRLHYQNYLERRSEWDEERKNKLARLYDRFKAEMWAKVAEELQVPWRAAEAMHWQLGEHDMARRAGQTPFTLAAVNAEAAGRNSHIRGHAHSQSQESVGREMRASPPQHPFGAMTSSRSGSVMSRRDAAMQIGPPPPHPMPPSVTSMPQQQQQQQQQQQQQQQQQQQQQQHHPQHHPGDYTFNKMGPGGTLPPIQPQPRVPGPLPGVAELTTGVTPYSTPPSIHMPGPPPPQGMHHGMAPQQQQHGHQHGPPAMYAEQDLGRMKRPSSPDNRLRESNYRRRMD
Length367
PositionTail
OrganismCordyceps confragosa RCEF 1005
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Cordycipitaceae> Akanthomyces> Cordyceps confragosa.
Aromaticity0.05
Grand average of hydropathy-1.175
Instability index90.51
Isoelectric point9.90
Molecular weight41428.04
Publications
PubMed=27071652

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
DNA binding	GO:0003677	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07513
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.29|      18|      22|     282|     300|       1
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  282-  300 (29.10/11.60)	PRV..PGPlPGVAELTTGVTP
  305-  324 (37.19/12.98)	PSIhmPGP.PPPQGMHHGMAP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.76|      14|      21|     162|     175|       2
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  162-  175 (25.12/13.10)	EAAGRNSHIRGHAH
  180-  193 (25.64/13.52)	ESVGREMRASPPQH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.67|      29|      72|     251|     281|       3
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  251-  281 (57.26/25.04)	QQQQHHPQHHP.GDYTFNKMGPGGtlPPIQPQ
  325-  354 (53.40/19.34)	QQQQHGHQHGPpAMYAEQDLGRMK..RPSSPD
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.61|      27|     202|      18|      51|       4
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   19-   51 (40.42/25.85)	QMPPrggsSATrrHLPPQGIDTYQQQPVKKQSK
  223-  249 (51.19/16.15)	PMPP....SVT..SMPQQQQQQQQQQQQQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.43|      30|      65|      52|      82|       5
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   52-   82 (48.94/33.03)	WSAEEDTLIIELR.GKGMKWdDVSKHLPGRSA
  119-  149 (51.49/30.28)	WAKVAEELQVPWRaAEAMHW.QLGEHDMARRA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07513 with Med15 domain of Kingdom Fungi
Unable to open file!