Description | Mediator of RNA polymerase II transcription subunit 17 |
Sequence | MASGDGPPLSMRPFPVADKSPKNLADFIARVNALPGGFRSVTETSLEEDIHARNETDGEDVDMSSDADDDNDDDDEEEDASAKDPVVARMEVLKHIDIASNTAMLTLDSLSLLLSKQHPTQAGLTLSQQLRDMVGIGTLGADRLDDANTTPAKTADQAAVALGWTLTEINRARDAADDATAFLTAEMAAEGRYWEGVMGIRQAGWSVCRMPQERQTLGVRFGFSEAAADFKRNGLAPIRRGDDGEARLDIGRLGGTPERLVVTYERNGQVVGRAAPQELGDEEESLEARVLGARNTIFAQELWHELTREARSLAAYDVHPDGEKRLVCAVDGENARIIVELLPVADCQHPADEKQLPEDTTAQAISLALHILLTYAHRCNELLRIRPLPPHIPRTRGQQIYTLLRPIVARLLFARHAAACTALVGSLTRTLRSAGLAASSFTLRTPQPTVADLATAGPNQPSAAVNLVRAMLQPTDFALEIALLPDVAFTVRGRTYLVPVTATYYHVLAPADAAIHTLCAPYADGYPELQALSDYLCMAATRALAAHHGEKLKAASTGEGEEAWALGVHGTRIRNTKDLDRSQLDFAVTQEADGNLQLKVSSVPSGGAASLSSTDGEAAPPKASAAAAAGQSWTWTSSKDSSAQETLEAVVEKVLKN |
Length | 657 |
Position | Head |
Organism | Cordyceps confragosa RCEF 1005 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Cordycipitaceae> Akanthomyces> Cordyceps confragosa. |
Aromaticity | 0.05 |
Grand average of hydropathy | -0.253 |
Instability index | 40.10 |
Isoelectric point | 4.94 |
Molecular weight | 70461.20 |
Publications | PubMed=27071652 |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364140 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP07506 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 82.25| 27| 33| 132| 164| 1 --------------------------------------------------------------------------- 132- 164 (36.14/24.72) DMvgigTLGADRLDDAntTPAKTADQAAVALGW 168- 194 (46.10/18.73) EI....NRARDAADDA..TAFLTAEMAAEGRYW --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 75.32| 27| 33| 333| 365| 2 --------------------------------------------------------------------------- 336- 365 (41.20/42.97) RIIVE.LLPVAdcqHPADE....KQLPED...TTAQAI 366- 400 (34.12/17.00) SLALHiLLTYA...HRCNEllriRPLPPHiprTRGQQI --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 87.23| 28| 33| 202| 234| 3 --------------------------------------------------------------------------- 202- 234 (42.36/36.56) QAGWSVCRMPQERqtLGvrfGFSE.AAADFKRNG 240- 268 (44.87/24.88) RGDDGEARLDIGR..LG...GTPErLVVTYERNG --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 37.97| 12| 25| 277| 288| 4 --------------------------------------------------------------------------- 277- 288 (19.61/11.95) QELGDEEESLEA 304- 315 (18.36/10.69) HELTREARSLAA --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 69.24| 22| 23| 499| 520| 6 --------------------------------------------------------------------------- 472- 507 (28.52/13.34) LQPTDFALeiallpdvaftvrgRTYLVPVTATYYHV 508- 529 (40.72/21.99) LAPADAAI..............HTLCAPYADGYPEL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 71.11| 23| 36| 43| 66| 7 --------------------------------------------------------------------------- 43- 66 (33.84/27.68) ETSLEEDIHARNETdGEDVDMSSD 79- 101 (37.27/25.09) DASAKDPVVARMEV.LKHIDIASN --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) KASAAAAAGQSWTWT 2) PLSMRPFPVADKSPKNLADFIARVNAL | 622 8 | 636 34 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab