<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07504
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MDSQPSAARSALQEAAKYWSEFVARCIAQRLSSDRFQDFVQLVHAKHPLPPVLVADFFLRPQPSNHVSLDPRIPPYIQILTHLGYVDAPSILRVLYKYSALHVYDKPHADHNGETKREDGEETKQDKTVHWQDSSWAEEVLMYHVIKNMVEGTAFTGAKAGLELITITCKWMDRFINVSSTIAADILTNKHDRQGLAEMEAVRAALAALLLRMLDNHALLRIISKPFAKGLRKHLSDSLGSFIPTLQPVTPAFVERLEIFRTQTLAQLDPPDKKKKAANAVMDELLDSTVGLESFVIPEIPISNSRAALYVYLNAAKLVGRPVLDDAMLYAFLNNKYQGNQQSSAIDLIIASFDLLANAVFRNEGPKDASLLRSFVVNKLPLLLCQLCHPEFSATSAEFCITEALSRIDTSVFPTASLMFDESRNNNPYMDSVREEFCAACALHGLIERDHVDRILGETSMSYDPSLEKANRDRLVSDCLSDSGKIQNIISQLDKVDGNVGAVAHAIVELIRQLCINKDTMALKPLCTQLAQKPQSLDIILLFEKITSILEPVCSLLDNWRYEEDQGEYQPVYEEYGAILLLVFAFTYRYNLSPLDIGIQSVDSHVAKIITKSHILRPLDELSEQEMGHVTGWINGLFDNETGGLGDDLMSSCPPHEFYLLVAPIFQSIITAYTYGYINDESLKGGVEYLVDTFLLPSLVPAIRFLSDYIWVDQKEQKSIVKALQLLLTPSSISGEASTVLSSVKNLIAQPLEHALRTYQRQDPRNQDIEPLLRSLKENIPQSRRTGGAEHHEMESWANSSSNGLFGAIRHTMQGLVQWSLQPGVNVMPASYTHRQFIAGVRIIGPSRLLRLIMEEIRQQSDLGNAPVVYDVAAALVAATDSTNDTPPVSSNLLDTAGTMQSPPQRPQSLRDALKTAAEGYKRLQKQDPFLAEAMVRLHRRVETLMVMPQAQALLPTADMPLDLSGDAIAAAAAAGADPLAVDTTGLDMGLGGDLDLSGGGGDADLFGGLDTSMDMFDGWDSMDMGDMGVN |
Length | 1031 |
Position | Tail |
Organism | Cordyceps confragosa RCEF 1005 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Hypocreomycetidae> Hypocreales> Cordycipitaceae> Akanthomyces>
Cordyceps confragosa.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.109 |
Instability index | 45.64 |
Isoelectric point | 5.08 |
Molecular weight | 113947.71 |
Publications | PubMed=27071652
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP07504
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 41.93| 14| 18| 778| 795| 1
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778- 795 (20.78/22.24) EnipqSRRTG..GAEHHEME
799- 814 (21.15/11.04) N....SSSNGlfGAIRHTMQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 565.13| 198| 230| 265| 493| 2
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271- 493 (296.36/321.09) PDKKKKA.ANAVMD...EL..LDSTVGLESFVIpeiPISNSRAALYVYLNAAKL..VGRPV..LDDAMLYAFLNNKYQG.NQQSSAIDLIIASFDllanavFR.NEGPKDASL..LRSFV...VNKLPLLlcqlcHP..EFSatsaEFCITEALSRIDtSVF..PTASLMFDESRNNNP...YM..DSVREEFCAACAlHGLIERDHVDrilGETSMSYD....PSLEKANrdRLVSDCLS.DSGKIQNIIS..QL
496- 726 (268.76/210.30) VDGNVGAvAHAIVElirQLciNKDTMALKPLCT...QLAQKPQSLDIILLFEKItsILEPVcsLLDNWRYEEDQGEYQPvYEEYGAILLLVFAFT......YRyNLSPLDIGIqsVDSHVakiITKSHIL.....RPldELS....EQEMGHVTGWIN.GLFdnETGGLGDDLMSSCPPhefYLlvAPIFQSIITAYT.YGYINDESLK...GGVEYLVDtfllPSLVPAI..RFLSDYIWvDQKEQKSIVKalQL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 47.29| 15| 19| 880| 895| 3
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873- 888 (21.36/13.53) AAALVaATDSTNDTPP
890- 904 (25.92/12.06) SSNLL.DTAGTMQSPP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 104.62| 25| 25| 977| 1001| 5
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957- 974 (18.83/ 6.89) .......TADMPLDLSGD.AIAAAAA
977- 1001 (42.98/26.01) ADPLAVDTTGLDMGLGGD.LDLSGGG
1004- 1029 (42.80/25.87) ADLFGGLDTSMDMFDGWDsMDMGDMG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 84.89| 24| 155| 750| 773| 6
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750- 773 (43.90/32.46) QPLEHALRTYQRQDPRNQDIEPLL
908- 931 (40.99/29.76) QSLRDALKTAAEGYKRLQKQDPFL
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