<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07454

Description Metacaspase
SequenceMDPNPALPGEVTNLLDHEAKLVADAIQHFRAVALAATVRVSNRSTVGEAAANRLRMETEAAGLIKTAEDMLTLTRRIRELWVIGPLRKPGEGDAEAETRIRDAVVPVAGLLDGQRAQARQRLLGPHGTYRLTATGGPPPPAPPSTAAPATGAPSAPAPSAVTTAAATTGTATATAPTGPEGGVQPPLGSTTAAQTIAGGAEAGPGVAATAGGGTNTGTNATATAQLNQT
Length229
PositionHead
OrganismSporothrix insectorum RCEF 264
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Sordariomycetidae> Ophiostomatales> Ophiostomataceae> Sporothrix.
Aromaticity0.01
Grand average of hydropathy-0.178
Instability index29.14
Isoelectric point6.31
Molecular weight22776.23
Publications
PubMed=27071652

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07454
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.90|      18|      44|      47|      64|       3
---------------------------------------------------------------------------
   47-   64 (30.45/17.34)	GEA.AANRLR.METEAAGLI
   92-  111 (21.45/10.21)	GDAeAETRIRdAVVPVAGLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.94|      16|      16|     186|     201|       4
---------------------------------------------------------------------------
  186-  201 (27.69/10.49)	PLGSTTAAQTIAGGAE
  204-  219 (26.24/ 9.54)	PGVAATAGGGTNTGTN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07454 with Med22 domain of Kingdom Fungi
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