Description | RNA polymerase II mediator complex component Srb8 |
Sequence | MSSRNPKGAQQRAQQRAPTGSALQAHQRSISSSHIPPPSPVRRDGLPDHSQPTDPADTSSQAGTAGRHGATPRRTAGSKLRIELSNDDSLTPGPVTDSPQGTPSVMSHSAGFDSSADVSGHGSPALSRASQSDLSIPRMPMPRRRAPLQRFVPSNKTAAPPTAPIKRDSKPKQYTIEVPAAAPRYLTTNKPDTLHRDPFNKGLFSGHADFFPWTGRHHEDEWSTEAIQKGTWDRGSQNETSSARLAVYPSLKQKTGLNALSTIFMGVLNQRRNRGQITAPSTFKPPPRVTLTDTKREVWLKDLANPTISLRRLSRTIPHGIRGRTLLDQCLNKNVPTERAVWLAKCVGANEIRAFKRKGVTGALVMGNELKWIRDWTIFVEQFVDSVVSSVGEPDWKHRVTYSIRLATVLYSEHLLDRDHYLDWIVSGLENSSQAKLPMWILIAQICWTDILRSRKPGRRLVFALLNHLNTIYNDPDRDILIPLSNQLVSLLKSLVAKNPESFIQPLQWLKYRDCLSAFLSTDERAIQQALRSINHRNSELLVSTAASPPVGGKEHLVKLLDTTLHGKVDHDLSSKCWAISEDKTQILKTVIEWVTSFHRPGLEKIYTATNLLRSWASFRVNTTGAILDTLDSIEPDDEVRKQAVYRLVIELARTGHFSVSQYIQWLIARGNCHNAADVEETGPCASRLLVELPVSCIPEDRKMDRANLLRRAAHYDVADEARDISTAIKCVNQTIGLPLPNVDDYAALPSKPLPLRKLVNRISVSSFALKSAVGVHLCNEFRNLLPPRLDTDVSLNVFTSSRTILESTKDFSMLGEVLKSCSKMSNIEVLAVCVDTINVNLEVLLAVGIADELFALYFERLKAASREHGLVARPLLAALSSLAQRMPNQSVMAKNLQQELTQTDRTNPIDACSPVSDNMVSQATSPEGEFSEQIDKLLATGNSVDHPTMNRLFLNIVPRLEAGWNKLDASRRVYASLLARLRIFDSQHFDKLMSDWVSHIRSLKERPALLELLPLLVSLGCLTMVTVLHTANAAPVAANVTAVDSGPPRGSAIYLQELLQLILRKLPKQSPLTAEESYRFVVYQQAAKIEHSKALLLLIRNAVQEYSILRSRSTTTALPLDDRTCQDDVLEALRVLVVTNSTAAAEALSMKDLAPDASALIRTVAAKLLTPGDENRSSSFDKILGLANELTMPFCQLSLSMELSLPQDNRIAGNEPQESQFDVFARAMDSAIEARNILWTSMLPCLSDDITQHLRSQAHGRFLKMIPSSKATNFAELATSEDRIQLAKNLLGVIEAIISAQPPSKSAQLTTTLVDKLTDLWEIVSVREASAAQDAIRKHWLPFLLRFITLHSIYSSSASDTSTATASTATPGSSAVNKAVSNVVAPAASATTTANSNHEARARIVLVLCGILFALESQQTLPPDGKLAQQVFDIALLLVDALPDDMRLHCARNVLANPSAVPSSGTSATSRSGTSDPRIYYLFSAPRPTAADNLMLAHRERGSIPLSAAARGLGAMYGIGPTLQERYSHFALRRWEALSEPTPNVGENDTSLSLGLFEAIKIQ |
Length | 1564 |
Position | Kinase |
Organism | Cordyceps fumosorosea ARSEF 2679 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Cordycipitaceae> Cordyceps. |
Aromaticity | 0.06 |
Grand average of hydropathy | -0.213 |
Instability index | 45.73 |
Isoelectric point | 8.91 |
Molecular weight | 172026.33 |
Publications | PubMed=27071652 |
Annotated function |
Component of the SRB8-11 complex. The SRB8-11 complex is a
regulatory module of the Mediator complex which is itself involved in
regulation of basal and activated RNA polymerase II-dependent
transcription. The SRB8-11 complex may be involved in the
transcriptional repression of a subset of genes regulated by Mediator.
It may inhibit the association of the Mediator complex with RNA
polymerase II to form the holoenzyme complex.
Component of the srb8-11 complex. The srb8-11 complex is a
regulatory module of the Mediator complex which is itself involved in
regulation of basal and activated RNA polymerase II-dependent
transcription. The srb8-11 complex may be involved in the
transcriptional repression of a subset of genes regulated by Mediator.
It may inhibit the association of the Mediator complex with RNA
polymerase II to form the holoenzyme complex.
ECO:0000256 ARBA:ARBA00002895 ECO:0000256 ARBA:ARBA00003744 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP07450 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 179.70| 45| 52| 38| 82| 1 --------------------------------------------------------------------------- 2- 58 (66.08/40.24) SSRNPKGAQQRAQQRAPTGSALQA.............hqrsissshippPSPVRRDGLPDHSQPTDPADT 59- 112 (66.91/40.85) SSQAGTAGRHGATPRRTAGSKLRI................elsnddsltPGPVTDSPQGTPSVMSHSAGF 113- 180 (46.71/25.77) DSSADVSGHGSPALSRASQSDLSIprmpmprrraplqrfvpsnktaappTAPIKRDSKPKQYTIEVPA.. --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 275.09| 70| 123| 1268| 1337| 2 --------------------------------------------------------------------------- 1268- 1337 (111.09/75.67) PSSKATNFAELATSEDRI...............QLAKNLLGVIEAIISAQ..PP.SKSAQ....LTTTLVDKLTDL....WEIVSVREASAAQDAI 1387- 1462 (93.73/62.46) PAASATTTAN.SNHEARA...............RIVLVLCGILFALESQQtlPPdGKLAQqvfdIALLLVDALPDD....MRLHCARNVLANPSAV 1463- 1540 (70.27/44.61) PSSGTSATSRSGTSDPRIyylfsaprptaadnlMLAHRERGSIPLSAAAR..GL.GAMYG....IGPTLQERYSHFalrrWEALS........... --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 149.81| 51| 123| 1007| 1129| 3 --------------------------------------------------------------------------- 1011- 1062 (79.71/121.92) LELLPLLVSLGCLTMVTVLHTANAAPVAA....NVTA..VDSGPPRGSAIYlQELLQL 1131- 1187 (70.11/13.15) LEALRVLVVTNSTAAAEALSMKDLAPDASalirTVAAklLTPGDENRSSSF.DKILGL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 157.99| 52| 510| 680| 736| 7 --------------------------------------------------------------------------- 680- 736 (81.38/59.45) EETGP.CASRLLVELpvsCIPEDRKM.......DRANLLRRAahYDVADEARDI..STAIKCVNQTI 1190- 1251 (76.61/43.31) ELTMPfCQLSLSMEL...SLPQDNRIagnepqeSQFDVFARA..MDSAIEARNIlwTSMLPCLSDDI --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 95.04| 32| 118| 967| 1007| 12 --------------------------------------------------------------------------- 459- 495 (41.03/13.63) RRlVFA.LLNHLNtIYNDPDRDILIplsNQLVSLLKSL 972- 1004 (54.01/44.36) RR.VYAsLLARLR.IFDSQHFDKLM...SDWVSHIRSL --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) AQQRAQQRAPTGSALQAHQ 2) KLRIEL 3) RDSKPKQYTIE 4) RIYYLF | 9 79 167 1479 | 27 84 177 1484 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab