<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07444

Description WD40/YVTN repeat-like-containing domain protein
SequenceMTLTDATAHITDIFALASTPKSLLSAGGSSTIHVHDTTDPAFPLKQSISNAHKLGCHHLCTSRNGRYAASAGFGGEVKIWTLNADTGEWSNAGELTGSSVQAGEVWALALSEDGGYLASTTNDGRINVWDVVDEVKPRIREYETGSAGSGSFGMCVDLSRDGKFTASGHQNGAVYIFDNDTGRILYSLSGLAKPVRAVAFSPGNTRLAAAGDAGIIALYDMKHGEHIGNLTGHSSWITTIDWNDTGEYLLSGSMDGKVKVWSVERSDCVATHSETDKTLWAVRWLPKIGRSEMFCTAGANRSLSFYREATGG
Length312
PositionTail
OrganismBeauveria brongniartii RCEF 3172
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Cordycipitaceae> Beauveria> Beauveria brongniartii.
Aromaticity0.08
Grand average of hydropathy-0.225
Instability index23.63
Isoelectric point5.74
Molecular weight33214.51
Publications
PubMed=27071652

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07444
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     228.48|      45|      46|      75|     119|       1
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   60-  108 (73.74/36.17)	CTSRNGRYAASagfgGEVKIWTL.........NADTGEWSNAGE..LTGSSVQAGEVWAL
  109-  157 (40.33/17.01)	ALSEDGGYLASttndGRINVWDVvdevkprirEYETGS.AGSGS..F.GMCVD.......
  158-  198 (47.67/21.21)	.LSRDGKFTASghqnGAVYI..F.........DNDTGRI.......LYSLSGLAKPVRAV
  199-  234 (37.86/15.59)	AFSPGNTRLAAagdaGIIALYDM.........K..HGE..HIGN..LTGHS.........
  236-  263 (28.89/10.44)	....................WI............TTIDWNDTGEylLSGSMDGKVKVWSV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07444 with Med16 domain of Kingdom Fungi
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