<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07422

Description Mediator of RNA polymerase II transcription subunit 7
SequenceMEGSHRRNLPGGYLTPSPGSQDPDSPIPPFVNPGPGYDELVSETDGDADHIFTNNITDTMEEQDGASLSSTFPNPPPFWRDFTADKVARYEQLRNEYDEDEAEKTAADENYKPQSRIPNLPEELMHLQPPDEPADGRWRVFGDQYMLDDQLPTLEEQGITNLPASGQSSARDAKHYDRAFELKRLAKSLLLNFLELTGALSRSPSHAEAKVQDLRTLFINVHHILNEYRPHQARESAIEMMQDHLDRTRTETLAIRTQVDKAKRLLEGLGSLGLGGDTAGAGAAGAGAQQTAEKKEKNSGGDGVAAAAAEAANGADVDWERERQIWASVDDLFS
Length334
PositionMiddle
OrganismBeauveria brongniartii RCEF 3172
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Cordycipitaceae> Beauveria> Beauveria brongniartii.
Aromaticity0.07
Grand average of hydropathy-0.788
Instability index51.78
Isoelectric point4.65
Molecular weight36778.86
Publications
PubMed=27071652

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364060
ECO:0000256	ARBA:ARBA00003669
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP07422
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     141.21|      39|      57|       1|      39|       1
---------------------------------------------------------------------------
    1-   39 (74.89/35.71)	MEGSHRRNLPGGYLTPSPGSQD.PDSPIPPFVNPGPGYDE
   60-   99 (66.32/30.93)	MEEQDGASLSSTFPNPPPFWRDfTADKVARYEQLRNEYDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.48|      23|      24|     275|     297|       2
---------------------------------------------------------------------------
  275-  297 (39.90/25.62)	GGDTAGAGAAGA..GAQQTAEKKEK
  300-  324 (36.58/22.87)	GGDGVAAAAAEAanGADVDWERERQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07422 with Med7 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GAGAAGAGAQQTAEKKEKNSGGDGVAAAAAEAAN
2) MEGSHRRNLPGGYLTPSPGSQDPDSPIPPFVNPGPGYDELVSETDGDADHIFTNNITDTMEEQDGASLSSTFPNPPPFWRD
3) RYEQLRNEYDEDEAEKTAADENYKPQSRIPNLPEELMHLQPPDEPADGRWR
280
1
89
313
81
139










Molecular Recognition Features






MoRF SequenceStartStop




1) GRWRVFGDQYML
136
147