<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07421

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMATGDGPPLSMRPFPVADKSPKSLADFIARVNALPGGFRSVTETSLEEELGARRDGTITTTGGRGGEEDAAQDDDVDMSDDANADDDEEDDDEDTAAKDPMTARMEVLRNIEIAEKTNMSPPSSLPPPSIASNTAMLTLDSLSLLLSKHNPTQASLTLSQQLRELVGIGTMGADRLDDANTTPAKTRDCEAVAAGWTLMEISRTRDAAEDAAAFLGAEMAAEGRYWEGVMGVRQAGWSVCRVPGGSGTGDASTGLGVRFGFSEAAPEFQRNGLAPIRRGDDGVPWLDMGRLGGTPERLVVTYERGGKVVGRAASQELRDDDGDDNEAGGDLQARVLGARNTIFAQELWHELTREARSLAAYDVHPDDEKRLVCAVDADARIIVELLPASSSSSSAAAQPHLNDHDENLPENTTAEAISLALHILLTYAHRCNELLRIRPLPPHVPRTRGQHVHTLLRPIIARLLYARSARSATQLVGNLVQTLRRAGVTGSSFTLCTPQPTVADFAAAAAGPNQPSAAVSLVRHMLQPTDFALDVALLPGGDDDDDDGGGDVSFTVRGRTYLVPVTATYYHVLAPAGAAVHALCAPYPDGYPDLAALADYLCVVAARALAAHYLRRRRAAAAGAGGAGAGDSAAAAAVQEEEEDKDKGQTWVLGALGTRIRHARDHDRPQLEFVVERDAAAAAAAEEEGEDGGAAALRLTVSTDRQSWTWSASNSENSAKETLEAVIDKVLQ
Length732
PositionHead
OrganismBeauveria brongniartii RCEF 3172
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Cordycipitaceae> Beauveria> Beauveria brongniartii.
Aromaticity0.05
Grand average of hydropathy-0.325
Instability index45.43
Isoelectric point4.72
Molecular weight77561.14
Publications
PubMed=27071652

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364140
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP07421
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.92|      28|     126|      50|      84|       1
---------------------------------------------------------------------------
   53-   80 (45.85/18.02)	RRDGTITTTGGRGGEEDAAQDDDVDMSD
  676-  703 (37.07/ 9.70)	ERDAAAAAAAEEEGEDGGAAALRLTVST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.14|      16|     126|     443|     458|       2
---------------------------------------------------------------------------
  443-  458 (31.40/15.92)	HVPRTRGQHVHTLLRP
  571-  586 (29.74/14.74)	HVLAPAGAAVHALCAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     156.15|      41|     452|     167|     207|       3
---------------------------------------------------------------------------
   81-  109 (24.76/ 7.56)	...........DANADDDEEDDDEDTAAKDPMtarMEV.LR....
  167-  207 (71.12/35.47)	GIGTMGADRLDDANTTPAKTRDCEAVAAGWTL...MEI.SRTRDA
  623-  663 (60.28/28.95)	GAGGAGAGDSAAAAAVQEEEED.KDKGQTWVL...GALgTRIRHA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.44|      21|     220|     317|     337|       4
---------------------------------------------------------------------------
  317-  337 (38.12/26.43)	LRDDDGDDNEAGGDLQARVLG
  538-  558 (40.32/28.54)	LPGGDDDDDDGGGDVSFTVRG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07421 with Med17 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALPGGFRSVTETSLEEELGARRDGTITTTGGRGGEEDAAQDDDVDMSDDANADDDEEDDDEDTAAKDPMTARMEVLRNIEIAEKTNMSPPSSLPPPSIASNT
2) MATGDGPPLSMRPFPVADKSPKSLADFIARV
33
1
134
31










Molecular Recognition Features






MoRF SequenceStartStop




1) KSLADFIARV
2) MRPFPVA
22
11
31
17