<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07406
Description |
Mediator of RNA polymerase II transcription subunit 16 (Fragment) |
Sequence | LLAVRTVALNQPSSLAHRPWWTLVDAIAHRHEVPESTPMTEAKMPLMLENGMNGSMQVDQLDVDDLFGDGVGLSLHTARPLTKHLRQRVDELRTRGCCQGVAWSRSGAIASISPDGKTLEARFLRSHPDDGNWGLSEPTKVDLITINASSPIVHLAWASTASPELAVVDATGRVAILTYSITLNRPFATRKWDHDPSDDLHAIVGSYWLPLAPQAKQYYVSHGPAVKDGNQYRYESSFVHAYGPWHPNPSKSAFLCVTTNGHLKMFWAQNNNKIEETTLELESVNSSDDLITHAALHSDKSNLWIALATTSKQLRLVRVGINWGLPQSQSDNKPPPGSQALNPTMQEKHVAISSWLPSGSSTTPIDSAANQLTHLEILPSTLDHTGQGWAPLVILAVRTYLPTPNTPYQETQSIIDKWEVLNDQAQSLHPAFEQLGSRRNSTGAAPAPTSRLKKHDPIVVNKVIIGVHTLQYGRVICLAFSDGSVEYRDRFTLQEIYNEMNLDRVMTLNQVGFTFQDESPCLQMAFSPTNCSIVKIQDDGKVKWSKLHYPLGDIGNSSQDEPYAATLAALTVAASTATFNNINYDDILAVARPYADKKRFTFDWINEIVRMLKVPVDYSEDTHHDSLVRNSSLQMCLSILNHLGYKGMFQPRSFGGKFAMLALNARNVVILITIASNTPVNIREKLSPLDEHEVVDALAGCAKWSLDLLSWLTDSLFALLDDPQFLALLTPQRFSEISTYLQSRSDVSLHLLLCSSTRGFLSAVCRRILHLEILSNRAIEFYERRAAMQNATDPSSQGKSLHVVLYKAYQKMQRVTSSSLIKVQEFDRLLTVLNNDIRAAYQNSLASLASKNPPGAGGQKAMDAQIKNAQIHCELNMLLASSPPPAFLSVLLKFFNSDLKTYRAQADPSKLFFADFDLLEIDDDRRALAARKAKGRFIDVFKRVELAAPPARGTKEGDEAKLAQWRRCVRCSAVMEDVFGSRPGFTFVLAQQRKCSCGGHWGLLPKGALML |
Length | 1011 |
Position | Tail |
Organism | Colletotrichum incanum |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Hypocreomycetidae> Glomerellales> Glomerellaceae> Colletotrichum>
Colletotrichum spaethianum species complex.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.223 |
Instability index | 41.01 |
Isoelectric point | 7.45 |
Molecular weight | 112178.49 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP07406
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 82.33| 29| 158| 716| 748| 1
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697- 726 (48.24/28.21) ALAGCAKWSlDLLSWL...TD.SLFALL..DDPQFL
727- 761 (34.09/29.88) ALLTPQRFS.EISTYLqsrSDvSLHLLLcsSTRGFL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 94.94| 23| 93| 195| 217| 2
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195- 217 (44.36/30.68) DPSDDL..HAIVGS....YWLPLAPQAKQ
285- 313 (30.11/18.18) NSSDDLitHAALHSdksnLWIALATTSKQ
343- 357 (20.46/ 9.72) PTMQEK..HVAISS.....WLP.......
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 49.14| 14| 96| 871| 891| 6
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871- 884 (25.16/23.28) IHCELNMLLASSPP
895- 908 (23.98/ 6.50) FNSDLKTYRAQADP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 67.30| 18| 26| 953| 971| 8
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953- 971 (31.63/27.97) GTKEGDEAKLAQWRRCvRC
980- 997 (35.67/26.19) GSRPGFTFVLAQQRKC.SC
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 291.09| 90| 422| 53| 149| 11
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53- 149 (147.18/115.19) NGSMQV.DQLDVDDLFGDgvglsLHTARPLTkhLRQRVDELRTRGCCQGVAWSRSG.AIASISPDGKTLEARFLRSHPDDGNWGLSEPTKVDL..ITINAS
482- 575 (143.91/95.58) DGSVEYrDRFTLQEIYNE.....MNLDRVMT..LNQVGFTFQDESPCLQMAFSPTNcSIVKIQDDGKVKWSKLHYPLGDIGNSSQDEPYAATLaaLTVAAS
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