<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07388

Description Uncharacterized protein
SequenceMDSNNRSSSQLDEPVVIDAPTGWKSQLQADSRRRIIIKILDTLKRHLPFSGEEGLQELEKIAVRFEQKIYDAATSQSDYLRKISLKMLTMETKNPLPNVVQFNSANHGQNPPNPDFATELDDGEVCNPGPLTPVQVFVENCMQFEEIEAENPGLMDNNNWRPTQSGGEPAMDAGGDWRSQLQADSRQRIVTKIMDTLKRHLPFSGQEGLQELEKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETKNPMPNAMQSNSSNNGQNPPDPGSQNMQSQLNSQAPPLSVPVQSNLTQSGQLLTQNIANNIGSGGMQGSASLTSSLPPVGSLPQTNIPNVVNQNNNMQNIPNISGVVQNSVGSAIGQGVPSNMFGNSQRQMQGRQQQGVPQQQPQQQSQSSQQSLYQQHLKQKFQSGAISQSQMQSHLQQLQQQQQQQNLLQSNQLHSSQQSVMQPSMMQSAPLSSLQQNQQSSAQQSTQSVLQQHPQALRQRQQQASNIHQQQPSLPQQAILPTQQQQQQHLVGQSNNTNIQQNQLIGQQNSIPDMQQQQRLIGQQNNLSNQQQQLIGLPNNLPHMHQQQLGPQGGVGGLQQQQQQHHQLLGAQSGTSVMPNNQHSVHMLQPKVPMQQSQQSMSNLLPSQGQQSQQQSQQQMMSNLLPNQSQTQQQSQQMMSQIQSQPGQLHKQLGLQQQPNPLQRDMQQRLQTPGTLLQQQNLIDQKQVFQPQRAMPEASSTSQDSTANGGDWQEEIYQKIKAMKDMYFLDLNDMYQKIAAKLHQNESLLQQQPHMQQGKNPQLEKLKAFKSMLERFISLLQVSKSNIQIGYKDKLGSYEKQIMSILNSNRPRKPIPPMQQGQALPPQHMHPMQQSQPPQSQMNQLQPLENQMNSQMQSLNLPGSGGTMQQKSIASLHHNPSSPVSGLPNTQQNMINSLQPSSALDPGQSNSMNSMQQVASGSLQQNHASGAFQQQHSASQRSAYQQLKPGNQFHISSPQLLQPASPQISQHASPQIDQQNMLSALTKNGTPLQSVNSPFIVPSPSTPSVPSPMPGESEKVNSGVSTLSNPGNIGQHQTAGSLVPAQSLAIGTPGISASPLLAEFTSPEGHHAVPATVVPGKSNATEQPIERLLKVMKSMSSDALTASVRDIGSVVSMIDRVAGSAPGNGSRAAVGEDLVAMTKCRLQARNFISQDGTTGTKKMKRYTTAMPSDVVSSTGSMTDSFKPFHGSELSDLESTATSIAKKPRNEANLALFEEIKEINQRLIDTVVDISDEDVDPTATATAATIEVGEGTIVKCSYSAVALSPNLKSQYASSQMSPIQPLRLLVPKNYPNCSPVLLDKFPTEDSKDYEDLSMKARSRFSTSLRTLSQPLSIGDIAKTWDRCARAVISDYAQQSGGGTFSSKYGTWEDCLTI
Length1405
PositionTail
OrganismDaucus carota subsp. sativus (Carrot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Apiales> Apiaceae> Apioideae> Scandiceae> Daucinae> Daucus> Daucus sect. Daucus.
Aromaticity0.03
Grand average of hydropathy-0.741
Instability index72.73
Isoelectric point7.72
Molecular weight154261.82
Publications
PubMed=27158781

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07388
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     980.00|     151|     153|       1|     153|       1
---------------------------------------------------------------------------
    1-  144 (231.47/68.85)	..........MDSNN.RSSSQLDEPvVIDAPTGWKS....QLQA..........DSRRRIIIKIL...DTLK............RH.....LPF......SG.EEGLQEL..EK.I.AV.....RFEQKIYDAATSQSD....YLRKI.SLKML..TMETKN......P........................LPNVVQFNSANHG........QN.PPNP...DFATE.....LDDGE.VCNPGP......LT.PV.QVFVENCMQF
  145-  295 (250.67/75.21)	EEIeAENPGlMDNNNwRPTQSGGEP.AMDAGGDWRS....QLQA..........DSRQRIVTKIM...DTLK............RH.....LPF......SG.QEGLQEL..EK.I.AV.....RFEEKIYTAATSQSD....YLRKI.SLKML..TMETKN......P........................MPNAMQSNSSNNG........QN.PPDP...G.SQN.....MQSQL.NSQAPP......LSvPV.Q...SNLTQS
  301-  377 (68.09/14.30)	QNI.ANNIG................................................................................................................................................................sggmqgsasltsslppvgslpqtnIPNVV..NQNNNM........QN.IPN.....ISGV.....VQNSV.GSAIGQ......GV.PS.NMFGNSQRQM
  378-  474 (111.55/28.34)	Q...........................................................................grqqqgvpQQ.....QPQ......QQsQSSQQSLyqQH.L..........KQKFQSGAISQSQ....MQSHL.....Q..QLQQQQ......Q........................QQNLLQSNQLHSS........QQ.SV...............MQPSMmQSA..P......LS.SLqQNQQSSAQQS
  562-  710 (130.76/34.41)	.....QLIGlPNNLPhMHQQQLG.P.QGGVGG.LQ.....QQQQ..........QHHQ............LLgaqsgtsvmpnnQHsvhmlQPK....vpMQ.Q.SQQSM..SNlL.P........SQGQQSQQQSQQQ....MMSNL.....LpnQSQTQQ......Q........................SQQMMSQIQSQPGqlhkqlglQQ.QPNPlqrDMQQR.....LQ......TPGT......LL.QQ.QN........
  738-  887 (114.91/29.16)	..............................GGDWQEeiyqKIKAmkdmyfldlnDMYQKIAAKL.hqnESLL............QQ.....QPH......MQ.QGKNPQL..EK.LkAFksmleRF...ISLLQVSKSNiqigYKDKLgSYEKQ..IMSILNsnrprkP........................IP.PMQ.....QG........QAlPP........QH.....MHPMQ.QSQ.PPqsqmnqLQ.PL.ENQMNSQMQS
  888-  964 (72.56/15.75)	LNL...........................................................................................pgsggtMQ.QKSIASL..HH.N.P........SSPVSGLPNTQQN....MINSL.....Q..PSSALD......P............................GQSNSMNSM........QQ.VASG...SLQQNhasgaFQQQ..............................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      67.39|      14|      15|     529|     542|       2
---------------------------------------------------------------------------
  502-  515 (23.50/ 7.44)	SLPQQAILPT..QQQQ
  533-  548 (21.76/ 6.22)	LIGQQNSIPDmqQQQR
  549-  561 (22.13/ 6.48)	LIGQQNNLSN..QQQ.
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     489.57|     116|     116|    1110|    1225|       4
---------------------------------------------------------------------------
  998- 1110 (160.71/82.87)	SQHASPQIDQ.....QNMLS.ALTKNGTP.....LQSVNSPFIV.PSPSTPSVPSPMP.GEsEKVNSGVSTLSN....PGNIGQHQTAGS.LVPAQSLAIGTPGISASPLLAE.FTSPEGHHavpatVVPGK
 1111- 1226 (182.76/95.30)	SNATEQPIERLLKVMKSMSSDALTASVRD.....IGSVVSMIDR.VAGSAPGNGSRAAVGE.DLVAMTKCRLQA....RNFISQDGTTGTKKMKRYTTAMPSDVVSSTGSMTDSFKPFHGSE.....LSDLE
 1227- 1344 (146.09/74.63)	STATS.....IAKKPRNEANLALFEEIKEinqrlIDTVVDISDEdVDPTATATAATIEVGE.G..TIVKCSYSAvalsPNLKSQYASSQMSPIQPLRLLVPKNYPNCSPVLLDKFPTEDSKD.....YEDL.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.14|      11|      27|     490|     500|       6
---------------------------------------------------------------------------
  490-  500 (20.20/ 8.38)	QQQASNIHQQQ
  522-  532 (19.94/ 8.17)	QSNNTNIQQNQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07388 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AIGQGVPSNMFGNSQRQMQGRQQQGVPQQQPQQQSQSSQQSLYQQHLKQKFQSGAISQSQMQSHLQQLQQQQQQQNLLQSNQLHSSQQSVMQPSMMQSAPLSSLQQNQQSSAQQSTQSVLQQHPQALRQRQQQASNIHQQQPSLPQQAILPTQQQQQQHLVGQSNNTNIQQNQLIGQQNSIPDMQQQQRLIGQQNNLSNQQQQLIGLPNNLPHMHQQQLGPQGGVGGLQQQQQQHHQLLGAQSGTSVMPNNQHSVHMLQPKVPMQQSQQSMSNLLPSQGQQSQQQSQQQMMSNLLPNQSQTQQQSQQMMSQIQSQPGQLHKQLGLQQQPNPLQRDMQQRLQTPGTLL
2) EAENPGLMDNNNWRPTQSGGEPAMDAGGDWRSQLQADSRQRIVTKIMDTL
3) ISLKMLTMETKNPMPNAMQSNSSNNGQNPPDPGSQNMQSQLNSQAPPLSVPVQSNLTQSGQLLTQNIANNIGSGGMQGSASLTSSLPPVGSLPQTNIPNVVNQNNNMQNIPNISGVVQNSVG
4) KQIMSILNSNRPRKPIPPMQQGQALPPQHMHPMQQSQPPQSQMNQLQPLENQMNSQMQSLNLPGSGGTMQQKSIASLHHNPSSPVSGLPNTQQNMINSLQPSSALDPGQSNSMNSMQQVASGSLQQNHASGAFQQQHSASQRSAYQQLKPGNQFHISSPQLLQPASPQISQHASPQIDQQNMLSALTKNGTPLQSVNSPFIVPSPSTPSVPSPMPGESEKVNSGVSTLSNPGNIGQHQTAGSLVPAQSL
5) LPNVVQFNSANHGQNPPNPDFATELDDGEV
6) PLLAEFTSPEGHHAVPATVVPGKSNATEQPIERLLKVM
7) QNLIDQKQVFQPQRAMPEASSTSQDSTANGGDWQEE
360
148
237
829
96
1088
709
706
197
358
1077
125
1125
744










Molecular Recognition Features






MoRF SequenceStartStop




NANANA