<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07380

Description Uncharacterized protein
SequenceMDIDEFRRILSDSAVDIWSFIDTAIAVASSDYGEELKDRRDEIVQRLYACRNCGDQVNEHRRIVEPVVKVDNSQAKLKHSPYTPQSVHREEDVDVVNDDEEEDPYAGLFDDDEETRILRIKDQIEDPDQTEESLVELLQGLADMDITFKGLKETDIGRYVNRLRKHESNEVRRLVKQLVRKWKDLVDEWVKLNPPEIPSSTIIADGESPPMNMRRNLPNGHQVPDFAYSPNPNNGSSGSERNNSEPEQKPKSVPRRELVAKPTYRPTAGSASAPPLNRPHKETAIDPDRLASARKRLHENYQEAQNAKKQRTIQVMDIHEIPKPKNGYIAKNKGGFHGRNHR
Length342
PositionUnknown
OrganismDaucus carota subsp. sativus (Carrot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Apiales> Apiaceae> Apioideae> Scandiceae> Daucinae> Daucus> Daucus sect. Daucus.
Aromaticity0.05
Grand average of hydropathy-1.018
Instability index49.97
Isoelectric point5.69
Molecular weight39208.17
Publications
PubMed=27158781

Function

Annotated function 
GO - Cellular Component
cytosol	GO:0005829	IEA:EnsemblPlants
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07380
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.96|      11|      20|      99|     117|       1
---------------------------------------------------------------------------
   99-  114 (15.51/27.24)	DEEEDPyaglfDDDEE
  122-  132 (21.45/ 7.87)	DQIEDP.....DQTEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.39|      17|      19|      28|      45|       2
---------------------------------------------------------------------------
   28-   45 (23.74/18.72)	ASSDYGEELKDRRdEIVQ
   49-   65 (31.65/19.98)	ACRNCGDQVNEHR.RIVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.44|      17|      19|     196|     212|       4
---------------------------------------------------------------------------
  196-  212 (31.24/17.59)	EIPSSTIIAD.GESP.PMN
  216-  234 (25.21/12.93)	NLPNGHQVPDfAYSPnPNN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.62|      13|      23|     250|     262|       5
---------------------------------------------------------------------------
  250-  262 (22.50/13.18)	PKSVPRRELVAKP
  275-  287 (24.11/14.61)	PLNRPHKETAIDP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07380 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EIPSSTIIADGESPPMNMRRNLPNGHQVPDFAYSPNPNNGSSGSERNNSEPEQKPKSVPRRELVAKPTYRPTAGSASAPPLNRPHKETAIDPDRLASARKRLHENYQEAQNAKKQRTIQVMDIHEIPKPKNGYIAKNKGGFHGRNHR
196
342










Molecular Recognition Features






MoRF SequenceStartStop




1) RILRIK
2) VAKPTYRPT
3) YIAKNKGGFHGRNHR
116
259
328
121
267
342