<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07376

Description Uncharacterized protein
SequenceMQRYHATSSTSAVNNNAIGGRSAKDSSRSEASPVTSNFPLNSRRQIQVTPYKLRCEKESLNSRLGPPDFNPPTLNCPEETLTREYVQSGYRETVEGLEESREISLSQAQAFSRPLVLKCKESIRKYHRAINEARARKRKEGQVYGVPLSGNLLTKPGTFVEQKPCGEDFRKKWMEGLSQPRKQLRSLADHIPHGYKKTTLFEVLIRNNVPILRATWFIKVTYLNQIRPGSSSTPEKTQYTRSEQWTKDVIDYLQHLLDEFVSKSKSLPIVNVRDRASQISSGSMHHKNGKISSTVDSEDPPFQFKWWYVVRILQWHYSEKLLVPSLIIDWILKQLQERESLGILQLLMPILYSVLETVVLSQSYVRKLTGLALRFIREPSPRGSDLVDNSQRAYTVSALVEMLRYLLLAVPDTFVALDCFPLPSCVVSHVVTDGGILTKLSEESRRERDGPMEISCVGRDRGLEVQGQPLSIDCVVSSIQKRATNLARAARPSHPGHNVAKAVQALDRALIKGDVTVAYRFLFEKICDGAVDTRWMTEVSPCLLSSLKWIGTINLSFLCSVFFICEWATCDFRDVRTGPIKGLKFTGGRDFSQIYIALRLLKLTKQSIQSSVRGRSDYISEIDDPVGGTGHLNNFFERRSSRNLSELKRKLKSLEGKRKDLSEVFQSPGPLHDIIVCWVDQHETQNGEGFKRLQLLVIELTRSGIFYPQAYVRQLIVSGIMDDPAADLGRRMRHYKIIKQLPGPYVCDALEEAQAVETELMAEAMHVYSNERRFVLSGLIGNRRSNNGKNNSSRKRKKYLNYGIDNSLLLAADQHTKDSSSSYSSGKNVNSVAHLEDLKVSISMLLQFPSFSSTSVDAGSVDMQGTNKKSVGSVIPMNDSGEGTPGCEECKRVKRQKLNDEKYLPVNSPNQFDDEDMWWVKEGSKSSESNRTDLPVKATKQASRGRQKVVRKTQSLAQLASARIEGSLGASISHLCDSRISCPHHRSGNDVDASKLAGIGLSAGNIVSIGKALKQLRFVEKRVISVWLMATAKKLVEEAEKDVVKVGQYSRQVPAADDRVSSRWKLGEEELSALIYLMDISYDLVPGVRFLLMLLPKVSHIASLHGGRNSFMLPRNVENNVCAIGETFLLSILRRYENMLAATDLIPETLSALINRATVVLASNGRVAGSPSLVYACYLLKKYRNVKSVSEWEKNLKATGDKRLISELESGRSSDGEYGFPLGVPAGVEDVDDFLRQKITGIRASRLGLSMKDIVQRHVDEAYHHYGRESKLNSGGTFKDHPSLEKVDDGHQIAQQTVMGLMECIRQTGGAAQEGDPTLVSSAVSAIVNNIGQVIAKMPELTAGGNSLSSSPSLCFARRTLRIHINCLALLKEALGERQSRVFEIALATEASSAIAQLFAPGKNPRGQFHMSPEAQDFNPNSSNDAINNTKPVLGRAAKSTAAVTALVVGSILQGIATLERMVTVFRLKEGLDVVNYVRSMRSNSNGNSRVGALKVENMIEVSVHWFRVLVGNCRTVSDGFLVELLGEASVLALSRMQRMLPLSLVFQPAYSIFAFIVWRPFILKFNTIAREDPPQLHNSLTLAINDVIRHLPFRDVCLRDTPGFYDIVSADSTDSEFAAMLELSGLHVHSKALAFVPLRSRLFLNTMIDCKLPHVFAQDDRSRVPGHGESKLHYAENEAKILDKLVHVLDTLQPAKFHWQWVELRLLLNEQALVEKLESDTPLAEAIHSLYPDPDKVAASENENNFIEIILTRLLVRPDAAPLYSEVVHLFGRSLEESMLLATKWFLNGPDVLFGRKSIRQRLINIAESRGLSTKAQFWRPWGWCSSNFNLPKSKSEKGKFDVFSFEEGEVVEEGIDSNRNIKVPSKILDVKTNFVYQQHETERALTELVVPCIDQSSDDSRNTFASDLIKQMNTIDQQISAVTRGSSKQPGTVTSGVEASSVKGNTRKGARGGSPGIARRSAVPVETVLPSSSALRASMSLRLQFLLRLLPLVCADRAPSGRNMRYMLAAVILHLLGSRVVYEDLDQSNLTLEMSSKREVELMVDAYSAASVDLSGENLFDRLLSVLHVLLSSCQPSWLKLKSNSKSAIESVRSCTVFDRDVAESMQNDLNNMTLPDIIRWRIQTAMPVLFSSFRCSISCQPPSVSASALAALQPSTLVSGLHPGNINQSQRNLGASARGTTQGAGKNKPSALQQDLGMEMDPWTLLEEGTESGPSSSNTAIMGGSDQVKASSWLKGAVRVRRMDLAYIGSVDEDS
Length2258
PositionKinase
OrganismDaucus carota subsp. sativus (Carrot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Apiales> Apiaceae> Apioideae> Scandiceae> Daucinae> Daucus> Daucus sect. Daucus.
Aromaticity0.07
Grand average of hydropathy-0.266
Instability index47.41
Isoelectric point8.99
Molecular weight250750.62
Publications
PubMed=27158781

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of development, heterochronic	GO:0040034	IEA:EnsemblPlants
regulation of radial pattern formation	GO:0090213	IEA:EnsemblPlants
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07376
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     275.35|      89|     259|    1312|    1410|       1
---------------------------------------------------------------------------
 1312- 1410 (132.95/87.20)	AQEGDPTLVSSAVSAIvNNigqVIAKMP......ELTAGGNSLSSSPSL..CFAR..RTLRIHINCLALlkeALGERQSRVFeiaLATEASSAIAQLFAPGKNPRGQFH
 1570- 1668 (142.40/72.16)	AREDPPQLHNSLTLAI.ND...VIRHLPfrdvclRDTPGFYDIVSADSTdsEFAAmlELSGLHVHSKAL...AFVPLRSRLF...LNTMIDCKLPHVFAQDDRSRVPGH
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.27|      35|     259|     495|     534|       2
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  495-  534 (52.13/48.14)	PGHNVAKAV...QALDRALIKGDVTVaY....RFlfekICDGAVDTR
  742-  783 (53.14/34.32)	PGPYVCDALeeaQAVETELMAEAMHV.YsnerRF....VLSGLIGNR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     192.70|      64|     259|     925|    1007|       3
---------------------------------------------------------------------------
  934- 1006 (95.69/96.05)	LPVKATKQASRGRqkvvrktqSLAQLASARIEGSLGASISH..LCDSRISCpHHRSGND....VDASKLAGIGLSAGNI
 1992- 2061 (97.01/54.72)	LPLVCADRAPSGR........NMRYMLAAVILHLLGSRVVYedLDQSNLTL.EMSSKREvelmVDAYSAASVDLSGENL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.39|      40|     904|     630|     678|       4
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  630-  678 (61.04/61.89)	GHLNNFFERRSSRNLSELKRKLkslegkrkDLSEVFQSPGPLHDIIVcW
 1520- 1559 (70.35/46.82)	GFLVELLGEASVLALSRMQRML........PLSLVFQPAYSIFAFIV.W
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.99|      35|     907|     190|     224|       5
---------------------------------------------------------------------------
  190-  224 (62.76/41.70)	HIP..HGYKKTTLFEVLIRNNVPILRATWFIKV..TYLN
 1100- 1138 (53.23/34.21)	HIAslHGGRNSFMLPRNVENNVCAIGETFLLSIlrRYEN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.69|      28|     904|     375|     404|       6
---------------------------------------------------------------------------
  375-  404 (45.43/30.62)	FIREPSPRGSDlvDNSQRA.YTVSALVEMLR
 1278- 1306 (48.26/27.09)	FKDHPSLEKVD..DGHQIAqQTVMGLMECIR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.04|      29|     253|    1905|    1933|       9
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 1905- 1933 (49.41/32.85)	TFASDL.IKQMNTIDQQISAVTRGSSKQPG
 2159- 2188 (43.63/28.04)	TLVSGLhPGNINQSQRNLGASARGTTQGAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.50|      33|    1347|     827|     860|      16
---------------------------------------------------------------------------
  827-  860 (52.46/39.96)	KNVNSvAHLEDLKVSIS..MLLQF.....PSFSSTSVDAGS
 2189- 2228 (48.05/31.42)	KNKPS.ALQQDLGMEMDpwTLLEEgtesgPSSSNTAIMGGS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07376 with Med12 domain of Kingdom Viridiplantae
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