<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07374

Description Uncharacterized protein
SequenceMDSDSSRRDTQGGELAPDGGAEWRSRMQADARQKVITKIMDSLMRHLPLAGQEGLQELKKISVRFEERIYFAATSQEDYLRRISSRLVSIETKHAMANATPSNSVSIGKNPPDPGSQSMQSQSNSQGPPLPVPFQTDLSQSAQQLPQEFANDIASAGMQGSAGLSSSLPQISSLSQTNISNINQNSNMQSIPNFSGVLQNSVASAVGQDVPSNIFANSQRHTGRQQQVVAQQRLQQSQNSAQFLCKQQVLKQKIQPGTISHSQMQPHIQKQEQQHNLLHSNQLHSSQQSIMQPSIMQSTPVSNLQQNQQSSARQSTQSGVQQHPQPVRQLQASNIYQQQTEFHQQGVLPKQQQHLVGLSNATYIQQNQLIGQQNSNPDMQQQQPSLLNQQNDLSNQQQQLMGFPNKLAHMHQQQSDSQEQQHHYQLAGDQSGTSIMPSNKNSGDMLRHPKVTLQQSQQSMSNSLPSQGQQLQQQSQQQTMSNLLPNGPNQTQTQLQSQIMSQMQPQPVQLHQQLGSQQKPNPLHHEMQQRWQTLQQQQKLVSQPQRAMQEASSTSLDSTAQTGNANGGDWKEEIYQKIKSMKDMYFLGLNDLCQKIAVRLHRHESLLLQQPQSQQGKNLQVEKLKSFKSMLERFLSFLQISKSNIQIGYKDKLGLYEKQIISMLNSDRPRKPIPPMQQEQSLIPSHVHSMQQSQRPQYQMTQLQPTDNQLNFQMQPQNLQGSGGTMQQNMANLQHNPSSPLSGLSNAQQSVMNSLKPSSALGPGQSNSLNSVQQVATGPLQQNSMRVTQQANVNLISSQSGVNCLQANLNSQPNSTSQRSAYHQQLKPGNRFPISSPQQLQPPLPQISQHGSPQVEQQNMPSALNRSGTPLQSTNSPLMVPSPSTPAVPSPVPGESEKVNSGVSSLSKADNIGHQTVGTLVPAQSLAKGTPGISASPLLDEFSPEADHGIAATIVSGKSNATEEPLERLIKVVKSMSSKALTASVRDIGSVVSMIDRMAGSAPGNGSSAAVGEDLGDMTMCRQQARTFITRDGTTETKRTKHYATAMPSDVVSTVGSINDGFKQLSGSDSCDLEPTAKKPRIEVNNALLEEVKEINHLLIDTVVNISDEDADPTMRDAAIGGGEGTVVKCSFCAISLSPNLKPQYFSSQMSSIQPLALLVPKNYPSCSPILLDKFPVEVCMDYEDLSSKVRSRFSISLRSLSQPMSIGDIAKTWDICAREVISEYAQQSGGGSFSSKYGTWENCVTAA
Length1248
PositionTail
OrganismDaucus carota subsp. sativus (Carrot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Apiales> Apiaceae> Apioideae> Scandiceae> Daucinae> Daucus> Daucus sect. Daucus.
Aromaticity0.04
Grand average of hydropathy-0.696
Instability index69.89
Isoelectric point8.54
Molecular weight136792.36
Publications
PubMed=27158781

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07374
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     812.16|      96|      96|     158|     253|       1
---------------------------------------------------------------------------
   49-  154 (73.16/14.44)	..................LA....GQEGL.QE..LKK..ISVR.FEERI........yfAA..........TSQE...DYLRRIS..SRL.VS..IE...TKHA.....MA.NATPSNSVSigknppdpgsqsmQ..SQSN...SqG.PPLP...VPFQT...DLS....QS..aQQL..PQEF.ANDI.A
  155-  250 (155.73/38.34)	SAG...............MQ....GSAGLSSS..LPQ..ISSL.SQTNI..........SN..........INQN...SNMQSIPNFSGV.LQ..NS...VASA.....VG.QDVPSNIFA.............N..SQRH...T.G.RQQQ...VVAQQ...RLQ....QS...QNS..AQFLCKQQV.L
  251-  348 (101.28/22.58)	KQK...............IQ...pGTISHSQM..QPH..IQKQeQQHNLlhsnqlhssqQS..........IMQP...SIMQSTP.VSNL.QQ..NQ...QSSA......R.QSTQSGV...................QQH...P......Q...PVRQ.....LQ....ASniyQQQ..TEF.HQQGV.L
  349-  453 (87.25/18.52)	PKQ...............QQ....HLVGLSNAtyIQQ..NQLI.GQQN...........SNpdmqqqqpslLNQQndlSNQQQ..QLMG..FP..NK...LAHM.....HQ.QQSDSQ................E..QQHHyqlA.G.DQS......GTS...IMP....SN...KNS..GDMLRHPKVtL
  454-  515 (81.86/16.96)	QQS..........................................QQSM..........SN.....................SLPSQGQQ.LQ..QQ...S.........Q.QQTMSNLLP.............NgpNQTQ...T.Q.LQSQ...IMSQM...QPQ....PV...Q........LHQQL.G
  516-  641 (71.63/14.00)	SQQkpnplhhemqqrwqtLQ....QQQKLVSQ...PQraMQEA.SSTSL..........DS..........TAQT...GNANG.GDWKEE.IY..QK...IKSMkdmyfLGlNDLCQKIAV.............R..LHRH...E.SlLLQQ...PQSQQ.gkNLQveklKS...FKSmlERFLSFLQI.S
  642-  719 (96.60/21.23)	KSN...............IQigykDKLGLYEK....Q..I........I..........SM..........LNSD...RPRKPIPPMQQ..EQ..SL.................IPSHV...............H..SMQQ...S.Q.RPQY...QMTQ.....LQ....PT...DNQ..LNFQMQPQN.L
  720-  809 (94.28/20.56)	QGS...........ggtmQQ....NMANLQHN...PS...SPL.S..GL..........SN...........AQQ...SVMNSLKP...............SSA.....LG.PGQSNSLNS.............V..QQVA...T.G.PLQQnsmRVTQQanvNLI....SS...QSG..VN..CLQAN.L
  823-  898 (50.38/ 7.85)	HQQ.......lkpgnrfpIS....SPQQLQPP..LPQ..I....SQHGS..........PQ..........VEQ....QNMPSALNRSGTpLQstNSplmVPSP.....ST.PAVPSPVPG.............E..SEK...................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     270.56|      66|     147|     903|     968|       2
---------------------------------------------------------------------------
  903-  950 (70.63/37.28)	..............................VSSL.SKAD..NIGHQTVGT....LVP.AQSLAKGTPGIS.ASPLL..DEFSPEADHG.I
  951- 1018 (72.76/38.61)	AATIVSGKSNATEEPLER........likvVKSMsSKAL..TASVRDIGS....VVSmIDRMAGSAPGNG.SSAAV..GE.....DLGdM
 1025- 1099 (68.12/35.70)	ARTFIT.RDGTTE..TKRtkhyatampsdvVSTV.GSIN..DGFKQLSGSdscdLEP.T...AK.KPRIEvNNALL..EEV.KEINHL.L
 1100- 1149 (59.04/30.02)	IDTVVNI.SDEDADPTMR.....................daAIGGGE.GT....VVK.CSFCA.....IS.LSPNLkpQYFSSQ......
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07374 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IETKHAMANATPSNSVSIGKNPPDPGSQSMQSQSNSQGPPLPVPFQTDLSQSAQQLPQEFANDIASA
2) LNSDRPRKPIPPMQQEQSLIPSHVHSMQQSQRPQYQMTQLQPTDNQLNFQMQPQNLQGSGGTMQQNMANLQHNPSSPLSGLSNAQQSVMNSLKPSSALGPGQSNSLNSVQQVATGPLQQNSMRVTQQANVNLISSQSGVNCLQANLNSQPNSTSQRSAYHQQLKPGNRFPISSPQQLQPPLPQISQHGSPQVEQQNMPSALNRSGTPLQSTNSPLMVPSPSTPAVPSPVPGESEKVNSGVSSLSKADNIGHQTVGTLVPAQSLAKGTPGISASPLLDEF
3) MDSDSSRRDTQGGELAPDGGAEWRSRMQADA
4) QPGTISHSQMQPHIQKQEQQHNLLHSNQLHSSQQSIMQPSIMQSTPVSNLQQNQQSSARQSTQSGVQQHPQPVRQLQASNIY
5) YIQQNQLIGQQNSNPDMQQQQPSLLNQQNDLSNQQQQLMGFPNKLAHMHQQQSDSQEQQHHYQLAGDQSGTSIMPSNKNSGDMLRHPKVTLQQSQQSMSNSLPSQGQQLQQQSQQQTMSNLLPNGPNQTQTQLQSQIMSQMQPQPVQLHQQLGSQQKPNPLHHEMQQRWQTLQQQQKLVSQPQRAMQEASSTSLDSTAQTGNANGGDWKEE
90
664
1
255
363
156
942
31
336
573










Molecular Recognition Features






MoRF SequenceStartStop




NANANA