<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07372

Description Uncharacterized protein
SequenceMLRAPSANNSQSNPPDMDTNHQRASRAYQFHPARPVIIDLFNLYLGRNNRQKADDAREPPNKSQKRVSANRELPPRNEQFLIDFEQLQSQFSDQEQLRAVTESVLISLVIQCSGHAPRAEFLLFALRSLCSIGYINLDTFLSSLLSSVTAAELSVSQGSQMMSPLSGSTSHPGVLPSSGLISNVSNYQSTNPASPLHSVHGIGSPAQSANELSSRGPSIPMNSSDHTSNGQQSMTRVNVNCWQEWLIFADLFHFLMKSGCLDFVDFVDKLVVRLADGDQVILKTNHVTWLLAQIIRVDLVLNALNTDHRKVETTRKMLSFHKEERSSDPNSPQSILLDYISSCQNLRVWSLNTATREILNNEQLQKGKQIDEWWKQTNKGEFMMEYMNMDDRSTGMFWVVSYTMAQPACDTVLSWLTSGGTESLPASNLQANDRITVIREVNPVPVSLLSGLSMNMCMKLATQLEEVMFNGQAVASIALVETYARLLLIAPHSLFRLHLSHLTQRNPATLTRPGASLLVLELLNYRFLSLYRYLGKSKPLMYDVTKIIANLKGKRGEHRTFRLAENLCINLLLSLKDFYVVKKEGKGPTEFTETLNRITIMSLAIIIKTRGVADADHLLYLQPMLEQILTNSSHTWSEKTLRHFPSLLRDTLIGRMDKRSIAIQAWQQAETTVINQCTQLLSPAADPTYVMTYISHSFPQHRHYLCAGAWILMHGHPENINSANLARVLREFSPEEVTANIYTMVDVLLHHLQLELQRGHSLQELMVKACANLAFFIWTHELLPLDILLLALTDRDDDPHALRIVISLLERQELQQKVKFYLNNRGPPEHWLFSGPFKRVELQKALGNHLSWKERFPPFFDDIAARLLPVIPLVIYRLIENDAIDAADRVLQLYSTFLHYHPLNFTFVRDILAYFYGHLPGKLILRILNVLDIKKIPFSESFPQHINASNAAASPPLEYFATLLLGIVNNVIPPLHSLKYGPGDVRVPHNKIPTTSQPGPTNAVEGQKAFYHIPDPGTYTQLILETAVIEILSLPVSASQIVTSLVQIVVHIQPTLIQSSHCLHGASSGVFSVLPTSPSGGSTDSMSASRSTPSVSGMNSSNIVSRSGYTCQQLSCLLIQACGLLLAQLPQEFHAQLYIEATRVIKDSWWLTDGKRTLGELDSAVGYALLDPTWAAQDNTSTAIGMFDTGDIVEWLEGTNLIIKHLRPVTSVAVLRIAFRIMGPLLPRVANSHSLFNKLLSMLLNVLVDVFGKNSQPSTSVEASDITDLIDFLHHVIHYEGQGGPVQQNSKPRVEVLALFGRAXASSFSP
Length1310
PositionTail
OrganismDaucus carota subsp. sativus (Carrot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Apiales> Apiaceae> Apioideae> Scandiceae> Daucinae> Daucus> Daucus sect. Daucus.
Aromaticity0.08
Grand average of hydropathy-0.069
Instability index45.20
Isoelectric point6.79
Molecular weight146272.18
Publications
PubMed=27158781

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07372
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     421.25|     138|     775|     164|     520|       1
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  371-  520 (220.69/478.87)	DEWWKQTNK...GEF..MMEYMNMDDRstgmfWVV..SYTMAQPACDT..VLSWLTsgGTeSLPASNLQANDRITVIREVNPVPVSLLSGL..SMNMCMKLATQLEEVMFN..GQAVASIALVETYARLLLIAphslFRLHLSHLT.QRNPATL.TRPGASLLVL
 1147- 1299 (200.57/75.46)	DSWWLTDGKrtlGELdsAVGYALLDPT.....WAAqdNTSTAIGMFDTgdIVEWLE..GT.NLIIKHLRPVTSVAVLRIAFRIMGPLLPRVanSHSLFNKLLSMLLNVLVDvfGKNSQPSTSVEASDITDLID....FLHHVIHYEgQGGPVQQnSKPRVEVLAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.95|      20|      28|     189|     208|       2
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  189-  208 (36.12/18.66)	STNPASPLHSVHGIGSPAQS
  214-  233 (36.82/19.15)	SRGPSIPMNSSDHTSNGQQS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.45|      37|     486|     105|     152|       3
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  105-  152 (42.55/53.72)	LISL..VIQCSGHAPrAEFLLFaLRSLcsigyinLDTFLSSllSSVTAAE
  600-  638 (61.91/37.51)	IMSLaiIIKTRGVAD.ADHLLY.LQPM.......LEQILTN..SSHTWSE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.96|      29|     917|     153|     186|       8
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  153-  186 (43.26/38.64)	LSV...SQGSQMMSPLSGSTSHPGVlpsSGLisNVSN
 1071- 1102 (47.71/27.72)	FSVlptSPSGGSTDSMSASRSTPSV...SGM..NSSN
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.19|      29|      94|     913|     941|       9
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  913-  941 (51.14/31.80)	AYFYGHLPGKLILRILN..VLDIKKIPFSES
 1009- 1039 (46.04/27.91)	AFYHIPDPGTYTQLILEtaVIEILSLPVSAS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07372 with Med23 domain of Kingdom Viridiplantae
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