<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07371

Description Uncharacterized protein
SequenceMAARSITCQLHNIEGVNSAQVEKACQAISRIKLSSNKYIKPGRSSPLVKDVGTIPLGDATRKIPQNLGGANGNFLGQMPPYISSNDSNTTPDKPKGMASSYPSGINGIAEAGKVACRQSNGQAPIHNHSHPNVTDGLYNQSTHASTVNGFQKHFPDDIDDDDILGSLDVDKIVMEHYQSSGTPQPLMSKLPSITPTGSKDNNTRPEESCLPPELCVNCSHGFKLPPIFILAQLGLCYEAAKHLQSMKDMLISISNDLLDNITDLNSEQIGKLHQDRAQLKKQIQQLEKHLHTTSVEEERRKSQFSASTASSRTIYSETPSAAAFHIDPMRLDTQFHMRNEPDGFDRWNSSYGVPPTPVEREPYIPKYIDVNYIEGSNDKKWSSLSFPWTKKLEVNNKTIFGNHSFRPNQREVINATMSGHDVFVLMPTGGGKSLTYQLPAYICPGITLVISPLVSLIQDQIMHLSQANIPATYLSANMEWTEQQDIFRELCLDSCRYKLLYVTPEKVAKSDVLLRHLEKLYSRQLLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPDTPVLALTATATSSVKEDVVQALGLVDCIIFRQSFNRPNLQYSVMPKTKKCVEDIDSFIKKFHRDDCGIIYCLSKMDCEKVAEKLKEYGHKAAFYHGGVDPSERAYVQEQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQLSSCVLYYNYSDYIRVKHMLSQGASEQSSFSSGYSRTSTTNHGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSGRCGKTCDNCSKVQSFIEKDCTLIAKQLVELVKLVRQQFSAAHILEVYRGSLNQFVKKHRHDSLSLHGAGKHLAKGEASRVLRYLVTEDFLFEDVKKSDAYGSVSSVVKVNESKVYNLCAGGQTIKLRFPTSTKSSKSGKNDATPAKALLTSGKNSLPLGDSSAQSQAESGISAKLYPALRQLRTALINEAGQNVFAHHIYNNATLQQMCKKIPRSKEELLEINGMGEVKVARYGDLLLQTIEATINEHNKTTKISSSSNESTDSGKRRRNRSNNSNENMSNDDVIDSTGRSKKRALSRPNQPVNIIDYEELADSDLIECVEFMESNIDIENDGSRSNQNSGGRVLPSWSRTAGN
Length1156
PositionUnknown
OrganismDaucus carota subsp. sativus (Carrot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Apiales> Apiaceae> Apioideae> Scandiceae> Daucinae> Daucus> Daucus sect. Daucus.
Aromaticity0.07
Grand average of hydropathy-0.510
Instability index48.77
Isoelectric point7.97
Molecular weight128723.92
Publications
PubMed=27158781

Function

Annotated function 
GO - Cellular Component
plasmodesma	GO:0009506	IEA:EnsemblPlants

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:EnsemblPlants
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
cellular response to abscisic acid stimulus	GO:0071215	IEA:EnsemblPlants
cellular response to cold	GO:0070417	IEA:EnsemblPlants
DNA replication	GO:0006260	IEA:InterPro
double-strand break repair via homologous recombination	GO:0000724	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07371
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.54|      25|     188|     399|     424|       1
---------------------------------------------------------------------------
  399-  424 (43.72/41.78)	IFgNHSF.RPN.QREVINAT...MSGHDVFV
  589-  618 (33.82/25.09)	IF.RQSFnRPNlQYSVMPKTkkcVEDIDSFI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.45|      40|     400|      38|      77|       2
---------------------------------------------------------------------------
   38-   77 (71.33/46.66)	YIKPGRS...SPLVKDVGTIPLGDATRKIPQNLGGANGNFLGQ
  441-  483 (68.11/44.21)	YICPGITlviSPLVSLIQDQIMHLSQANIPATYLSANMEWTEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     110.69|      28|     184|     619|     646|       5
---------------------------------------------------------------------------
  619-  646 (50.25/30.63)	KKFHR.......DDCGIIYCLSKMDCEKVAEKLKE
  779-  794 (20.23/ 8.02)	..................YCENDVDCRRLL.QLVH
  797-  831 (40.22/23.08)	EKFDSgrcgktcDNCSKVQSFIEKDCTLIAKQLVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.61|      22|     145|     881|     943|       6
---------------------------------------------------------------------------
  489-  510 (39.08/ 7.88)	ELCLDSCRYKLLYVTPEKVAKS
  918-  939 (38.53/37.25)	NLCAGGQTIKLRFPTSTKSSKS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07371 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EAGKVACRQSNGQAPIHNHSHPNVTDGLYNQST
2) EHNKTTKISSSSNESTDSGKRRRNRSNNSNENMSNDDVIDSTGRSKKRALSRPNQPVNI
3) FLGQMPPYISSNDSNTTPDKPKGMASSYPSG
110
1049
74
142
1107
104










Molecular Recognition Features






MoRF SequenceStartStop




1) PSWSRTA
1148
1154