<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07370

Description Uncharacterized protein
SequenceMASPAPAIPHSILQPPQTSTSLTNFGPRYWGPVPSFQVPQGLPGPPRLPGPPGLAPVSSSNMNVPSPFVNSSSPYATPMGSNASISSIPAIQPRPYPAYSSGPPMVATPQGLWVQPQTMGVLSRPPLLQCPPAVSGPFPLSAQGMQLPYVPLPDSQPPGVTPVGPPGGSFVYPTTSGNQSAVFSVPEPELPPGTSNDKPVIDASVRVGPPAGEQLDAWTAHKTETGAVYYYNAVTGESTYEKPAGFKGEAERVATQPTPISWERLGTTDWTLVTTNDGKRYYYNTKTKLSSWQVPTEVTELKKKQDLDATKEQPTSVPNAVAVTEKESAPIILSAPAVNTGGRDAAPLRSPNVPGASSALDMVKRKLQDSGTPATPTPVSSVTGTVASELNGSRTLENAGNGTQVEIHKDKHKDDNGDDPMSDSSSDSEDVDTRPSKEECIIQFKAMLKERGVAPFSKWEKELPKIVFDPRFKAIAGYSARRSLFEHYVRTRAEEERKEKRAAQKAAVEAFKQLLEEAKKDIDHNTDHHAFKKKWGHDPRFEALDRKERENLLNERVLPLKKEAQAKDQAMRAAAASNFKSMLRDRGDITASSRWSKVKDSIRNEQWYKSVKHEDREVLFNEFISDLKSAEQEAERIVKAKRDEEEKLKEIERQTRKRKEREEQEVERVRSKARRKEAVESYQALLVETIKDAQASWTESKLKLEKDPQGRATKYHLDQSDLEKLFREHVKMLNERCTRDFRALLAEVITAEAAMKERDDGKTVFTSWSTAKHLLKADVRYTKMPRKERESLWRRHVDDMQRRLKLSLNEQTEKHSLEAKNHPAVEAGKHHSGSRRNHEKR
Length841
PositionUnknown
OrganismDaucus carota subsp. sativus (Carrot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Apiales> Apiaceae> Apioideae> Scandiceae> Daucinae> Daucus> Daucus sect. Daucus.
Aromaticity0.06
Grand average of hydropathy-0.833
Instability index48.95
Isoelectric point9.07
Molecular weight93704.30
Publications
PubMed=27158781

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07370
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      93.46|      19|      20|      27|      45|       1
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   27-   45 (43.06/20.63)	PRYW.....G.....PVPSFQVPQGLPGP
   46-   67 (22.70/ 7.40)	PRLP.....GppglaPVSSSNM..NVPSP
   93-  115 (27.69/10.64)	PRPYpayssG.....P.PMVATPQGLWVQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     463.21|     100|     104|     534|     636|       2
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  417-  499 (121.60/70.43)	..GDDPMSDS...........SSDSED.VDTR..PSKEECIIQ...........FKAML............KER.G.VAPFSKWEKELPKIVFDPRFKAIAgYSARRSLFEHYVR..TRAEEERKE
  534-  636 (160.45/102.05)	KWGHDPRFEA....LD.....RKERENLLNERVLPLKKEAQAKDqamRAAAASNFKSML............RDR.GDITASSRWSKVKDSIRNEQWYKSVK.HEDREVLFNEFISDLKSAEQEAER
  641-  700 (68.08/36.22)	KRDEEEKLKE....IErqtrkRKEREEQEVERV.....RSKAR....RKEAVESYQALL............VETiKDAQAS..WT.....................................E..S
  703-  801 (113.07/64.98)	KLEKDPQGRAtkyhLD.....QSDLEKLFREHVKML.NERCTRD..........FRALLaevitaeaamkeRDD.GK.TVFTSWSTAKHLLKADVRYTKMP.RKERESLWRRHVDDMQ........
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.56|      25|      31|     131|     159|       3
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  131-  156 (44.50/23.08)	PPAVSGPFPlSAQGMQLPYVPLPDSQ
  165-  189 (45.06/24.65)	PPGGSFVYP.TTSGNQSAVFSVPEPE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     116.92|      28|      31|     342|     371|       4
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  308-  342 (33.95/17.56)	DATKEQPTSVPN.AvavtekeSAPIILSAPAVNTGG
  344-  371 (47.01/22.26)	DAAPLRSPNVPG.A.......SSALDMVKRKLQDSG
  373-  400 (35.96/14.61)	PATPTPVSSVTGtV.......ASELNG.SRTLENAG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.24|      42|      49|     191|     238|       6
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  191-  238 (73.80/56.29)	PPGTSNDKPvidasvRVG....PPAGEQLDA..WTAHKTETGAVYYYNAVTGES
  243-  290 (68.44/41.02)	PAGFKGEAE......RVAtqptPISWERLGTtdWTLVTTNDGKRYYYNTKTKLS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07370 with Med35 domain of Kingdom Viridiplantae
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