<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07361

Description Uncharacterized protein
SequenceMAGLKNLDKWREFFRSSCNSDIFDIIEHAIYVAASDCPKEFKLRRDRIAETLFSSKLIKCVGCDHVELGVKLEGVDDEEEFKNDGGFEFEGGRSKESKVDSCKDDHDDDDQHAGQMNDQMVSQLSYDDAEALTDELEKELQIHGEVLRIKEILENSEDEPISLVIDSLRRLELMALSVETLKATEIGKTVNVLRKHGSKDIRQLARTLIEVWKVLVDEWVNTTATEAGAPEGATPESVNPSTVVDEENGLPSPPLDDLTFLATQPATMEFSRFFDGLEDEENPAHCGKLDENKETGRKQVQNNRIVKHRQCLPVESITPPKDKKIESRKLDASLNKQVASLKPKLPVADTRASRPVKQSANQRVHTETKLQQKPEKVAIQRPPASQQNIPRHSNEASVQEKLEATKRKLQERYQQAENAKRQRTIQVMELHDLPKQDLGHKNSHGKPGNNHKRHWANGRR
Length460
PositionUnknown
OrganismDaucus carota subsp. sativus (Carrot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Apiales> Apiaceae> Apioideae> Scandiceae> Daucinae> Daucus> Daucus sect. Daucus.
Aromaticity0.04
Grand average of hydropathy-0.869
Instability index49.47
Isoelectric point5.77
Molecular weight52102.84
Publications
PubMed=27158781

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07361
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     170.03|      56|      82|      17|      78|       1
---------------------------------------------------------------------------
   17-   78 (80.50/58.31)	SCNSDIFDIIEHAiyvAASDCPKEFKLRRDRiAETLfSSKLIKCVGCdHVE.LGVK..LEGVDDE
  101-  159 (89.53/46.13)	SCKDDHDDDDQHA...GQMNDQMVSQLSYDD.AEAL.TDELEKELQI.HGEvLRIKeiLENSEDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.33|      29|      32|     227|     257|       2
---------------------------------------------------------------------------
  227-  257 (48.30/35.46)	AGAPegATPE.SVNPSTVVDEENGLPSPPLDD
  262-  291 (50.03/30.33)	ATQP..ATMEfSRFFDGLEDEENPAHCGKLDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.65|      46|      61|     298|     345|       3
---------------------------------------------------------------------------
  298-  345 (68.30/52.58)	KQVQNNRI...VKHRQcLPvESIT...PPKDKK.IESRKLDASLNKQVASLKPKL
  357-  409 (62.34/38.42)	KQSANQRVhteTKLQQ.KP.EKVAiqrPPASQQnIPRHSNEASVQEKLEATKRKL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07361 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ENPAHCGKLDENKETGRKQVQNNRIVKHRQCLPVESITPPKDKKIESRKLDASLNKQVASLKPKLPVADTRASRPVKQSANQRVHTETKLQQKPEKVAIQRPPASQQNIPRHSNEASVQEKLEATKRKLQERYQQAENAKRQRTIQVMELHDLPKQDLGHKNSHGKPGNNHKRHWANGRR
2) TATEAGAPEGATPESVNPSTVVDEENGLPSPPLDDLTFL
281
223
460
261










Molecular Recognition Features






MoRF SequenceStartStop




1) KQDLG
2) KRKLQE
3) NNHKRHWANGRR
435
406
449
439
411
460