<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07339

Description Mediator of RNA polymerase II transcription subunit 14
SequenceMETQINGHTSSNGSTLTNGFYEPPVEELERELPVVYDGQVPLGELVSRVVQAIYAELSELAETLPNMSDAARKRTLADWVVKTKKQVVKLYAIVKWSRDAGVVQKAMNITAFLMDQNRQFEEAIHGLKYAKESLDPARLRNHDLLTSLDVLTTGSYRRLPSAIQKLIVPPIPMTDEEVTKTLTDVEDVIRFRLKMSEVIPIEMSRYRIADGRVYFTVPRLFEVSLCVRGAEKEAGWFFVNVEFLLNVGGDPTCVQEFPRKPLGWLKQHITDEADARLAFYLPLPADQAQPPEAGAPPRPQLPEGVVDAPLVRIFNFLQMMSMSYMLEILCYQAGRLRVLGWGEYLKVQMSKDRKTLTLTYWVRQIPKDPALKRINLPLLGGKLTISIARAQTTPTNKANRPPKARVLAELQEKAKLRGGRPSDEVEPHELQVKWEPERSALGIIVPPEECHLAKSELSIDSDNLDVEALLCKVASIHVGAILRVVQHRLQHDQSTRSMFGPPGEVTLAAEDGVQTLRAHLCADEVVVMTIDTRTGRLNLRDTGDLAAANRGRRFTVITDRLNDNPTILYEAFSRLKLGTILDLAEQKANYLGLQSYRIRNFSPQEIQKLGPIARGMLYIELAKFPDHFLVLVVTDDDWRFALISVEALPNTPCHDLLMKDIGWLDVKRIHGEEIVISHRLHGSDPAVGQKRKRDSIDGIPEPPAMGYLTPRYTLETQVLREVYAYCCARVAFYKIEQQFKTRNIPYTTVACTNVAQTPELAHLQSTLSRSVPLLCVQSSDILSGAPAAEAAMPNIRVIPLNWWNDEKQAQVVTCVKLKYVQQPVGKRAGSNVIRPSKRIIYDTTEAIVSFLSEDVDKCVDEFLEEWARVSKIVVIAREVAQMATAKHWADVRLLSFDLQTVEFAYAGDYTVSITCTDQLSPTGGSYDLLFSRTGDRGGNMDMDMDDRCNPHEDLEPFLRNVLRHGRLVPSLQRLVRLLRDSLSVVVELEDIRQMVTRAPENVDVFPKAAGWFRILYGDFRHALDFRIMTGARVVILDASHFLFPGEESSSRARQPASQGHARKPSSTSSVMPGGSLDSHLLLQAIPDFRRIVTEVVKDAVSRGCIAHITSINIGIICDSAAVRFVARTMHERVLQRLKQG
Length1140
PositionTail
OrganismDaedalea quercina L-15889
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Polyporales> Daedalea.
Aromaticity0.07
Grand average of hydropathy-0.186
Instability index47.02
Isoelectric point6.96
Molecular weight128043.95
Publications
PubMed=26659563

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:UniProtKB-UniRule

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:UniProtKB-UniRule

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07339
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.37|      20|     271|      66|      89|       1
---------------------------------------------------------------------------
   66-   89 (29.36/28.12)	NMSDAARKRTLADWVvktkKQVVK
  348-  367 (37.01/24.43)	QMSKDRKTLTLTYWV....RQIPK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     206.09|      65|     380|     504|     574|       4
---------------------------------------------------------------------------
  504-  574 (99.22/66.87)	EVTLAAEDgVQTLRAHLCADEVVVMTIDTRtgrlnLRDTG...DLAAANRGRRFTVITDRLND..NPTILYEAFSR
  890-  959 (106.87/58.26)	DVRLLSFD.LQTVEFAYAGDYTVSITCTDQ.....LSPTGgsyDLLFSRTGDRGGNMDMDMDDrcNPHEDLEPFLR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     174.05|      43|     380|     677|     719|      10
---------------------------------------------------------------------------
  677-  719 (72.38/57.31)	SHRLHGSDPAVGQKRKRDSIDGIPEPPA...MGYLTPRYTLETQVL
  997- 1028 (31.73/19.74)	..............RAPENVDVFPKAAGwfrILYGDFRHALDFRIM
 1039- 1081 (69.94/55.06)	SHFLFPGEESSSRARQPASQGHARKPSS...TSSVMPGGSLDSHLL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07339 with Med14 domain of Kingdom Fungi
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