<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07334
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MSAAAVDFADLTQSAFLLGVPARTWETMLGSAYGKLDATVANFTEIGESILGALLELFVSYPGDQTLLAYLHMLVAPPTYTAMAHSYVPLSNALGFFIRNAGQMTDPATFHLVFKTLIGLHYANPVSAYGSIITYGETVPSILNTVNACLPLLSTWESLTSSTPFHGQPSPISQIIVLLLSYVQDYSSITTTEAMMYYSEVQHALQTIPFDSDTRQALENLMMSLGLVVGDNAKAAREVEMMQAIQLNLAKSSSVGAAAGLDIITCGTLLRNLFDERAHDLSFGHTDEVVAVLRAVFHYTAMPLPAFYTQLILAAFDIVSQYAPQTPQKLRYQLWCSLVISRLPALLRRFDTHISAEIPSDIAPGSAVQAALRDVYSRTDLLGRMDSLAAAAESTHVPLRTRFLQSLVAVALIDHPFASSLEASIPPEQLPRLVTEAQEHGMDLESYIESRVSMDGPIEDGMGLLDRAVTDFAVHASLSEVLQKRFISLASTQDVEPLSHMCKVLSRHDVTVDILSLHVPLNDILGHGLHFVHNFTCEGVGDPQTAVSQFGVVVQFMQLTLTRLQLASFSYSLAGKSLRSDFLLSHRTYTMSELSREELVAFQNWHKALFGRDSDGIDDNILRSTNPLTLLRITPTLLSEAAAQAVVKVVDAECLRNGVQFFVGPLLNWTLVGVVKAFVAEIDRLGYCATMQIDVLKTLAASAKDMPVVFRLCANNLLRMVPEPQAQNLLAKQNEFREMKRVAAIALYARPGEPLALPAVTHDHASYPSLAIRRAIEIARSGGAPGINVRRCLTVSTPVAFLEIIWAEFTTPNADVAHEHDIFRRIAAHILVATALHCHPNCPPLLPVFLHSFLPRKIAWLDAQLQVGEPQLQTSDQRLQNIEMLTAILMSSMTAAFHLERSLNSLNTTYPSIKAASTRLKSMSLAARLSQSLRISTSPVTAMIRQRLSTSHSFVAMYPEFAT |
Length | 963 |
Position | Tail |
Organism | Exidia glandulosa HHB12029 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes>
Auriculariales> Exidiaceae> Exidia.
|
Aromaticity | 0.08 |
Grand average of hydropathy | 0.204 |
Instability index | 48.10 |
Isoelectric point | 5.92 |
Molecular weight | 105579.45 |
Publications | PubMed=26659563
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP07334
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 117.42| 33| 52| 79| 111| 1
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79- 111 (59.11/39.06) TYTAMAHSYVPLSNALGFFIRNAGQMTDPATFH
134- 166 (58.31/38.42) TYGETVPSILNTVNACLPLLSTWESLTSSTPFH
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 159.70| 78| 288| 404| 490| 2
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404- 451 (44.92/29.24) ....................................................................................................................................................................................................................................................LQSLVAVAlIDHPFASSLeasiPPEQLPRLVTEAQEHGM..DLESYIESR
452- 490 (27.56/18.64) VSMDGPIEDGMGLldRAVTDfaVHASLSEVLQKRFISLA...............................................................................................................................................................................................................................................................
696- 740 (48.87/21.48) .......................................stqdveplshmckvlsrhdvtvdilslhvplndilghglhfvhnftcegvgdpqtavsqfgvvvqfmqltltrlqlasfsyslagkslrsdfllshrtytmselsreelvafqnwhkalfgrdsdgiddnilrstnpltllritptllseaaaqavvkvvdaeclrngvqffvgpllnwtlvgvvkafvaeidrlgycatmqidvLKTLAASA.KDMPVVFRL....CANNLLRMVPEPQAQNLlaKQNEFREMK
745- 779 (38.35/14.91) IALYARPGEPLAL..PAVTH..DHASYPSLAIRRAIEIA...............................................................................................................................................................................................................................................................
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 40.33| 11| 53| 291| 303| 3
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270- 280 (19.69/ 7.26) LRNLFDERAHD
293- 303 (20.64/ 8.45) LRAVFHYTAMP
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