Description | Mediator of RNA polymerase II transcription subunit 17 |
Sequence | MATTSTSTATSTATTSAHRAAQPQPQPQAHPEPLTLHLTPFTLPAPLLALSPDGEPTYAPKEDGQQRLTRELRRLWARGDYAEVTEAGVGRELQGEGMDVDDQQEEEEDGESVEEGIRPEELWRVKQAVLSKLHEAMQQTLTAQTLLALLSHSAGAAPKPPQRPAMPPPPPPPIPLDGFPTMTATLTTPPGPAPATQLRRRQLAAGLKNASLRRAARLFEAGAGDIERALEKEAHYFERALALREHWRLAPRAAERTPRRRPGKEPARDFAVYYGMEGAPLAQRAAAVAHLSPTSAQGELLFPSRTGRRLRVSLTSLSPGPVPGPGPGLQHLMGSSALELPEQAAEQEHPHGELALGLDLDAQLRDAQREVLEREVFHRLAREAMELVQLSPVIRERVVSLRPLPDLQLTFELVDPSDAPAAGSGQTHSHSRSHSPAVQLLAALLPLLHLPRTRPSLLQPLLKLLQYLQFSAQLTAQLAAVARGLTATGVPTGVQQRLVSADGAQVWKALLGEDAWAIGGEVRLALQGCAPILLAAAYPADLVLHTPRLGVHIAALPELGDVLAGEILARLSAAFQRVGNRVLRAQAAAKADEAEWTLGPGGKGWAEWPTGAVGFRISLSPAFDLAAEAVYSKRAVVREGMSPATPGMGHLESMRREWPEVKQEEDMEQEGRSPPGLVDWFEKGMKWVTEEE |
Length | 692 |
Position | Head |
Organism | Calocera cornea HHB12733 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Dacrymycetes> Dacrymycetales> Dacrymycetaceae> Calocera. |
Aromaticity | 0.05 |
Grand average of hydropathy | -0.333 |
Instability index | 54.44 |
Isoelectric point | 5.89 |
Molecular weight | 74818.18 |
Publications | PubMed=26659563 |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364140 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP07328 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 380.66| 94| 132| 2| 96| 1 --------------------------------------------------------------------------- 2- 96 (162.10/61.32) ATTSTSTATSTATTSAHRA.AQPQPQPQ......AHPEPLTLHLTPFTLP.APLLA........LSP...DGEPTYAPKEDGQQR.LTRELRRLWARGDyAEVTEAGVG...RELQGE 136- 233 (129.36/45.51) AMQQTLTAQTLLALLSHSAgAAPKP.PQrpamppPPPPPIPLDGFP.TMT.ATL..........TTP...PG.P..APATQLRRRqLAAGLKNASLRRA.ARLFEAGAGdieRALEKE 250- 334 (89.19/29.30) ...............APRA.AERTPRRR......PGKEPARDFAVYYGMEgAP.LAqraaavahLSPtsaQGELLF.PSRTG.RR.LRVSLTSL.SPG...PVPGPGPG..lQHLMG. --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 228.90| 47| 49| 562| 609| 2 --------------------------------------------------------------------------- 472- 517 (32.10/10.87) .......AQLTAQLAAVA.RGLTAtgvptgvqQRLVSADGAQvWKALLG..EDAWA... 519- 557 (51.76/22.18) ..GGEV..RL..ALQGCAPILL..........AAAYPADLVL.HT..PR.lGVHIAALP 562- 609 (79.32/41.66) VlAGEILARLSAAFQRVGNRVLRA........QAAAKADEAE.WTLGPG..GKGWAEWP 613- 659 (65.72/30.43) V..G.FRISLSPAFDLAAEAVYSK........RAVVREGMSP.ATPGMGhlESMRREWP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 65.99| 23| 25| 369| 392| 3 --------------------------------------------------------------------------- 369- 392 (34.81/22.81) RE.VLEREVFHRLaREAMELVQLS..P 395- 420 (31.18/15.80) RErVVSLRPLPDL.QLTFELVDPSdaP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 34.38| 10| 15| 440| 449| 5 --------------------------------------------------------------------------- 440- 449 (17.13/ 7.27) LLAALLPLLH 457- 466 (17.25/ 7.37) LLQPLLKLLQ --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) FAVYY 2) KWVTEEE | 270 686 | 274 692 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab