<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07272

Description Uncharacterized protein
SequenceMVVGSAEAVCNDIVFLVEGTSACGAYMNEIKMNYICQTVEYFNGGPIIEDRDCGSETFATLYSLVVYHSSDCLPADMVDVYGPFRNPHKFLQLLDKLDFSGGHAEHMASLTEGLATTLECFKDLALLRDPGLKAQKFCILVCNSAPYNLPVMDLPSFRGLTLEQLAVLVNENNIQLSIISPRRIPTWINLFDKAGGDSMAANSKHYAKDLRHLVMLSGFSLQESTISQAPIPSIPIPTVPTSPQGLSPNQQQTLRPVVNAVVRPIQPQNQPQQRPPVPVSFGINVTGPTSAPNVTIVNTVPPMMTADGGVRIRGPSPRWTGPNQGQQLPNQVLQQTQQTLPTQMQPTNQVRQPSQIQMPQTMQIPLQQQQLQQQHQQQASMLQTQQQQVPQVLNQNLQNSVLQHQQPMTMPMATNSIQQAQGQVQLQVPQQSQAAGQMIINPQQQQNVRAPFVASQSLVNQLNQGQAPNAGQMVNVNQQMLNQQQQQQIAARKLAMEQQQLQQQQQQQQQQQQQQQQQQQQQQQQQQPQPQPQNMNFAINPANANLGMQPNMPQQQQMQQQPQQVNVPATLTPGMVQQQAAAVVGAAPANPARERQVIWQGVLEWQEKTRDPQKLPRHVPCQVSASVTNGESEVKAEHWPQKLLMQLIPKTLISNFGGAHFRNARSVMFHPQDCEALEALAKVMSTGYAGCVHFTGMVNPNACEIKVLMLLYSPDKKAYIGFIPNDQAGFVDRIRKVIQQQKSKQVQQPPGPGQAGPSQNIAQTGPNILVTQTNPLSMGGGQMSAAPQPQQQQQQMQQPQMIGNSQQPAMAAPAPMANPVRGAAPTPAQLVAERQQNLMTIKQLQQTLEAAQQKDIHLKALEQQQRRAQLLQMQQQQLMQQQQQQQQQQQIQPNQQLQMQQQLQLQQQQMGQQQQMGQQQPMGQQQQMAGQQIQQQLQQLQSQQQMPAQQKLQQQLQAQQMQQQRNIRPAAALQNNPGLRNLLQQQQYRPQIMQPNPQNRMQQPNMQQPQQQQNSGGSQFDNLSLADLL
Length1029
PositionUnknown
OrganismDaphnia magna
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Crustacea> Branchiopoda> Diplostraca> Cladocera> Anomopoda> Daphniidae> Daphnia.
Aromaticity0.04
Grand average of hydropathy-0.683
Instability index69.44
Isoelectric point9.04
Molecular weight114864.13
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07272
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.47|      24|      27|     880|     906|       3
---------------------------------------------------------------------------
  887-  913 (41.10/10.48)	QQQQiqPNQQLQMQQQlQLQQQQMGQQ
  991- 1014 (43.37/ 6.83)	QIMQ..PNPQNRMQQP.NMQQPQQQQN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.86|      36|      36|     421|     456|       6
---------------------------------------------------------------------------
  421-  456 (62.28/13.79)	QGQVQLQVPQQSQAAGQMIINPQQQQNVRAPFVASQ
  520-  555 (56.58/11.71)	QQQQQQQQPQPQPQNMNFAINPANANLGMQPNMPQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     142.89|      26|      26|     729|     754|      10
---------------------------------------------------------------------------
  256-  290 (35.74/11.72)	PVVNAVVRPIQPQNQPQ.QRP.PvpvsfginvtGPTS
  314-  329 (27.42/ 6.85)	GPSPR.....WTGPN.QGQQL.P..............
  729-  754 (48.33/19.08)	GFVDRIRKVIQQQKSKQVQQP.P..........GPGQ
  756-  782 (31.39/ 9.17)	GPSQNIA...QTGPNILVTQTnP.......lsmGGGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.91|      19|      43|     348|     366|      14
---------------------------------------------------------------------------
  348-  366 (36.11/14.88)	NQVRQPSQIQMPQTMQIPL
  394-  412 (36.80/15.33)	NQNLQNSVLQHQQPMTMPM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     142.04|      35|      96|      83|     118|      16
---------------------------------------------------------------------------
   83-  118 (55.46/48.81)	PFRNPhKFLQLLDKLDFSGGHAEHMASLTEGLATTL
  149-  176 (35.45/23.84)	........LPVMDLPSFRGLTLEQLAVLVNENNIQL
  181-  210 (51.13/38.55)	PRRIP.TWINLFDK.....AGGDSMAANSKHYAKDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.16|      34|      41|     573|     609|      17
---------------------------------------------------------------------------
  573-  609 (55.81/41.47)	PGMVQQQAAAVVGAAPANPARERqviWQGVLEWQ..EKT
  616-  651 (57.35/34.97)	PRHVPCQVSASVTNGESEVKAEH...WPQKLLMQliPKT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.47|      15|     356|     467|     481|      24
---------------------------------------------------------------------------
  467-  481 (27.89/13.10)	APNAGQMVNVNQQML
  824-  838 (26.58/12.11)	APTPAQLVAERQQNL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07272 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AQQKLQQQLQAQQMQQQRNIRPAAALQNNPGLRNLLQQQQYRPQIMQPNPQNRMQQPNMQQPQQQQNSGGSQFDNLSLADL
2) IQQQKSKQVQQPPGPGQAGPSQNIAQTGPNILVTQTNPLSMGGGQMSAAPQPQQQQQQMQQPQMIGNSQQPAMAAPAPMANPVRGAAPTPAQLVAERQQN
3) PIPSIPIPTVPTSPQGLSPNQQQTLRPVVNAVVRPIQPQNQPQQRPPVPVSFGINVT
4) QQQQIAARKLAMEQQQLQQQQQQQQQQQQQQQQQQQQQQQQQQPQPQPQNMNFAINPANANLGMQPNMPQQQQMQQQPQQVNVPATLT
5) SAPNVTIVNTVPPMMTADGGVRIRGPSPRWTGPNQGQQLPNQVLQQTQQTLPTQMQPTNQVRQPSQIQMPQTMQIPLQQQQLQQQHQQQASMLQTQQQQVP
948
738
230
485
290
1028
837
286
572
390










Molecular Recognition Features






MoRF SequenceStartStop




NANANA