<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07239

Description Uncharacterized protein
SequenceMDQQPNPPNGQQNGAVNHLWHEEMTVQDRAHFVAQLAQALKHLSPNTIEQDIFAAAKNFESTLYQRSSNKNQYILAYARKFNQIKYQIQMQTQNGVAPGGPAGVGGPGNNNVVNDQLNALNGSPSMPTQQPQSSASPQMQAMQQQMQNMPNALNPNQQVPMQVQNQMRPNMFQHPTNLQHTQQPQQQNPNQQPQQQSTLLHQQQQQQQQQQQQQNPNQQQQQQQTPQQNQATSEMRAFQQRAMGNPTSLPMGAQQQQSSPVSAALLQNLQNGQSPLGLTQQQQQQQVQMFLARQMALQQQQQQQQQQQQQNQNQQGQQGQPNQQQQGNSNQQHSQHQQPGLSATMTPNAISMAMANRNMNRPPAPTTAAGMPVSGAQANYANMNIMNQMSIMQNSLQAQAQHISPELMLQMQQQQQHLQHQHQQQKQQLQQSHQQQLQQGQQNPQQQQLQQQQLQQLQLQQLQQLQQQQQQQLQQRQSSPAQQQQAQQAQQTQQAQQAQQAQQAKQAQQAQQAQQAQQAQQAQQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSAHQLQQNARNTTAQQRSQATEMIRQLDETISSTRARTRPLENLTDQEKNAIRENVLQMRTMYEKIDQLLPIFLALTSNIEATRRLILMKYMFEDQLNMLPQNVYLVSLENLQKLRDQFSGYFSWVRNAISGNAAQPSIQQQQQQQQQQQQQQQIHQQQQQQHQLQQQQHLQQQNAAQISAGQANSQPMDQIQQPGSIPYNGMQQQLQASPAQVKQQPQSQPQQSQQPQPPQQLARPHAEPSTNNVPPGMQHSPNANLIKRDSIDLKLPASKKHRGANQPSPSVPATAQQQQQQQQQPGQQQQQQRPSPASVPNAASPSAPPSSTSQLVDLTRSASLTASPGPIKSEPPVSNPMAGTSSMAPVLGQSQPIQLQQTGMSPMQKEAQQQMIYQSAIASGIPRPIADILPHRALQCCWLLYQANQNRVQLSEMQHEQIQGMLTDSIAAAREQLAGQHGQQQQAHPTPPSLASQQHAQQQIAQQQQQLAQQQLAQQQQQQNSQSQQSVPQQSTSQQQQQQQQQQQQLIAQQQQLQQQRQQAQRQQDTLPSDANASIKVEQKPNTIDLTIAATTTPNNASSPHNPAAMQRVSMEKAIELAATAATTSPSQQATHIMQLLQQQQQQQQQQQKVEGTTTAHAVPVNAAASISTTAAPSSSPLATTTISAPLPDASTASTPTLRPGMGPDGKVIQPILFTNDILKDVASITATPSSSSDSSSIALYMVDDFMANCTVNEEGDRRTVLFSESPLIVENALKKDFKDEPLSTNELDTKYMLSSSSTANNSYPWPDQSSNSSSLSSSSLSSCELSEDFVKNNWYYVGMDKDVPSIAETMPGLEFDEDGYLNCGGTSRLSHPPLF
Length1535
PositionTail
OrganismAbsidia glauca (Pin mould)
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Mucoromycotina> Mucoromycetes> Mucorales> Cunninghamellaceae> Absidia.
Aromaticity0.03
Grand average of hydropathy-1.030
Instability index80.76
Isoelectric point6.77
Molecular weight153488.50
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07239
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     143.65|      18|      18|     482|     499|       1
---------------------------------------------------------------------------
  201-  218 (36.45/ 7.37)	HQQQQQQQQQQQQQNPNQ
  297-  314 (35.74/ 6.99)	LQQQQQQQQQQQQQNQNQ
  482-  499 (34.89/ 6.54)	QQQQAQQAQQTQQAQQAQ
  822-  839 (36.57/ 7.44)	QQQQQQQQQQQQQQQIHQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.84|      22|      25|     339|     361|      11
---------------------------------------------------------------------------
  160-  181 (35.35/10.12)	PMQVQNQMRP.NMFQHPTNLQHT
  347-  369 (32.50/11.44)	PNAISMAMANrNMNRPPAPTTAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     139.05|      31|      31|     732|     762|      12
---------------------------------------------------------------------------
  690-  713 (24.64/14.01)	NA.RNTTAQQRSqateMIRQLDE..............TI
  714-  731 (25.14/14.47)	SSTRA...RTRP....LENLTDQ..............EK
  732-  762 (52.40/39.25)	NAIRENVLQMRT....MYEKIDQL..LP..IFLALTSNI
  763-  794 (36.87/25.13)	EATRRLIL.MKY....MFE..DQLnmLPqnVYLVSLENL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     127.12|      30|      31|    1325|    1355|      13
---------------------------------------------------------------------------
  990- 1007 (21.99/ 6.54)	.............SPASVPNAASPSAPP........SST
 1008- 1026 (26.11/ 9.77)	SQ....LVDL....TRSASLTASPG..P........I..
 1312- 1339 (45.07/23.31)	TTTAHAVP...VNAAASISTTAAPSSSP........LAT
 1340- 1374 (33.95/19.89)	TTISAPLPDAsTASTPTLR....PGMGPdgkviqpiLFT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.66|      25|      45|     453|     477|      14
---------------------------------------------------------------------------
  452-  476 (51.01/10.34)	QQLQQLQLQQLQQLQQQQQQQLQQR
  840-  864 (42.65/ 7.12)	QQQQQHQLQQQQHLQQQNAAQISAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.85|      19|      19|     371|     389|      16
---------------------------------------------------------------------------
  371-  389 (36.13/19.51)	MPVS.GAQANYANMNIMNQM
  392-  411 (30.72/15.21)	MQNSlQAQAQHISPELMLQM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.22|      23|      29|    1239|    1266|      17
---------------------------------------------------------------------------
 1239- 1266 (35.84/29.77)	KPNTIDLTIAATTTpnnasSPHNPAA..MQ
 1270- 1294 (34.38/16.68)	MEKAIELAATAATT.....SPSQQAThiMQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.65|      19|      20|      46|      65|      22
---------------------------------------------------------------------------
   46-   65 (28.94/26.03)	NTiEQDIFAAAKNFESTLYQ
   69-   87 (34.71/25.77)	NK.NQYILAYARKFNQIKYQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.94|      15|      15|     907|     921|      26
---------------------------------------------------------------------------
  907-  921 (28.99/12.19)	SQQPQPPQQLARPHA
  924-  938 (28.95/12.16)	STNNVPPGMQHSPNA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.36|      19|      49|    1059|    1077|      27
---------------------------------------------------------------------------
 1059- 1077 (34.56/16.58)	MSPMQKEAQQQMIYQSAIA
 1109- 1127 (31.80/14.54)	LSEMQHEQIQGMLTDSIAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.32|      22|      29|    1404|    1431|      28
---------------------------------------------------------------------------
 1404- 1425 (38.77/38.25)	DFMANCTVNEEGDRRTVLFSES
 1436- 1457 (37.56/21.29)	DFKDEPLSTNELDTKYMLSSSS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07239 with Med15 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAQPSIQQQQQQQQQQQQQQQIHQQQQQQHQLQQQQHLQQQNAAQISAGQANSQPMDQIQQPGSIPYNGMQQQLQASPAQVKQQPQSQPQQSQQPQPPQQLARPHAEPSTNNVPPGMQHSPNANLIKRDSIDLKLPASKKHRGANQPSPSVPATAQQQQQQQQQPGQQQQQQRPSPASVPNAASPSAPPSSTSQLVDLTRSASLTASPGPIKSEPPVSNPMAGTSSMAPVLGQSQPIQLQQTGMSPMQKEAQQQMIYQSA
2) AQQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSAHQLQQNARNTTAQQRSQATEMIRQLDE
3) IQMQTQNGVAPGGPAGVGGPGNNNVVNDQLNALNGSPSMPTQQPQSSASPQMQAMQQQMQNMPNALNPNQQVPMQVQNQMRPNMFQHPTNLQHTQQPQQQNPNQQPQQQSTLLHQQQQQQQQQQQQQNPNQQQQQQQTPQQNQATSEMRAFQQRAMGNPTSLPMGAQQQQSSPVSAALLQNLQNGQSPLGLTQQQQQQQVQMFLARQMALQQQQQQQQQQQQQNQNQQGQQGQPNQQQQGNSNQQHSQHQQPGLSATMTPNAISMAMANRNMNRPPAPTTAAGMPVSGAQANYANMNIMNQMSIMQNSLQAQAQHISPELMLQMQQQQQHLQHQHQQQKQQLQQSHQQQLQQGQQNPQQ
4) QLSEMQHEQIQGMLTDSIAAAREQLAGQHGQQQQAHPTPPSLASQQHAQQQIAQQQQQLAQQQLAQQQQQQNSQSQQSVPQQSTSQQQQQQQQQQQQLIAQQQQLQQQRQQAQRQQDTLPSDANASIKVEQKPNTIDLTIAATTTPNNASSPHNPAAMQRVSMEKAIELAATAATTSPSQQATHIMQLLQQQQQQQQQQQKVEGTTTAHAVPVNAAASISTTAAPSSSPLATTTISAPLPDASTASTPTLRPGMGPDG
816
522
88
1108
1075
711
446
1365










Molecular Recognition Features






MoRF SequenceStartStop




NANANA