<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07229

Description Uncharacterized protein
SequenceMTTYALEKVLQYAYFNGYTCVQWVDLVKQYMEQSEQDLSPVICDLLLKHFFSTSRVHSILLETYVAYALTGGPQQSSQGLVNEDAKALVQGKLFMSHLVNRDIRFASNREYSHQWSCILRLLPSVLVDVDGDRKEHLALAPMLTRLLVILSHIVAVGLYPHRRTASQRSRPLDNDGESDMDSDNDDTTKQQKVDNNDELNFSLTNNTTQLGMDSQLTFDPDATLDVDATQPMDDKKSIPVQISTANTPSTTLPEGSVSGLGLSDMDTLLQQNPSTITSAVTTQQPDELYHSTARSPSTLEKDSLEWENAISAAKLIIDLIEKKGLKRIIEKYNQGAKSDNDEDEKINAIDPWVSCHRILMPDKATSALSTASSATKSTSLSIASTHNVYIQKLLLLVERLTDRDLERRLAVHMKYHELEDEGTARAMPSAGLMGLVYHMVQICPTLDDDELISRLVKLQAIKGSFDESFYLELWFAALTGLREASLSTSCQNITSKTSVNEEHPNQATGVEICNTTVAANRLLWKNLVLVKLPHLIYCLQEHKKEEAARHSLDRGLYQKSTQSRKDDESNAIESSLMELKTFTGLLNACNPPACCPEFYVPSSKSFNLVNRFAFGGENDGSEEQQLSAAMDDMIDDSNYTTDFNTPTFIKAMQTISKDDIFTCILRSCRPYKSLRNNKSEGLTNGNSIKMEPNQDDLVKTEHLDDDERNQHKSLSSVPMDVDTADRQDGTSDAMAQVDQNIEQRMAAIQSNTTKASISELIHIGLVSLTHWRRIVEFLLKLLNEKAQAGDVRGLYRLCGALNDCPTAIDLVLQLHPPSALLTPLESICNTWNPSDDYMDVDDGASGNNDNDEDDDDDMDGIQNWYYKFGKIWIFVLVVASKFDISNVVGSIFKEKTGLCYQFFVTGPTIYGVHDHDQEVENLVGRWLSAMGGDGISDDLLRTTNLQMLLQGTPTIIDRLLCIYDAGRIETETFTEVLSYFRKRFLHFVLVPGVINVICDELLNRNASAALTCMTHLFLGPALPETLIGLCGNTVLGSLHAWMESQRQYKRLHGNKAAYPQQQIPEDQLSQMASLERFFITRLDVDDEHHLSFPETISNGVTRRTLTEKSREMFRYIVKSGRSMYMNNVDGDARNLWEPVANGKPPKQVVSHYLDLVMFQAALKMGGAHWFISMIVDEVLEAGKSGGAVRAAELGSCLLTTPLLYNGQPGGACLAMLRCLLQDVIPSSIKSCSTQNTSFFQGQTVGVFVSDCLVLMYQDQNDPVDKLGCQFFDALVIDRVRGGDVPSPQLVPQINGDGSRFALWDEQVVSSPVWRGFVKGLMSNPFIKEMWPNAYAS
Length1336
PositionTail
OrganismAbsidia glauca (Pin mould)
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Mucoromycotina> Mucoromycetes> Mucorales> Cunninghamellaceae> Absidia.
Aromaticity0.07
Grand average of hydropathy-0.284
Instability index42.68
Isoelectric point4.97
Molecular weight149100.00
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07229
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     378.67|     114|     855|     350|     474|       1
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  357-  474 (175.12/168.49)	RILMPDKATSALSTASsaTKSTSLSIASTHNVYIQKLLLLVERlTDRDLERRLAVHMKYHELEDEGTARAMPSAGLMGLVYHMVQICpTLDDDELISRLVKLQAIKGSFDESFYLELW
 1217- 1330 (203.55/154.73)	RCLLQDVIPSSIKSCS..TQNTSFFQGQTVGVFVSDCLVLMYQ.DQNDPVDKLGCQFFDALVIDRVRGGDVPSPQLVPQINGDGSRF.ALWDEQVVSSPVWRGFVKGLMSNPFIKEMW
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     444.73|     147|     210|     768|     926|       2
---------------------------------------------------------------------------
  768-  881 (153.91/126.30)	...................................................................................................LTHWR.RIVEFLL..KLLNEKAQAGDVRGLYRLCGALNDCPTAIDLVLQLHPPSALL.....TPLESIcNTWNPSD.DY..MDVDDGASGNNDNDEDDDDDMDGIQNWYykfgkiwIFVLVVASK
  882- 1087 (186.45/142.19)	F..DISN.VVGSIFKEKTGLCYQFFV.TGPTIYgVHDHDQEVENLvgrWlsamggdgisddllrttnlqmllqgtptiidrllciydagrietetftevLSYFRkRFLHFVLvpGVIN..VICDEL..LNRNASAALTCMT..HLFLGPALPETLIglcgnTVLGSL.HAWMESQrQYkrLHGNKAAYPQQQIPEDQLSQMASLERFF.......ITRLDVDDE
 1092- 1216 (104.37/66.11)	FpeTISNgVTRRTLTEKSREMFRYIVkSGRSMY.MNNVDGDARNL...W.....................epvangkppkqvvshyldlvmfqaalkmgGAHW......FIS..MIVDEVLEAGKSGGAVR.AAELGSCLLTTPLLYNGQPGGACL.....AML............................................................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     221.64|      74|     544|     115|     216|       3
---------------------------------------------------------------------------
  129-  214 (104.07/121.99)	VDgdrkehlALAPMLTRLLVILShiVAVGLYPhRRTASQRSrpLDNDGESDMDS...DNDDT.TKQQKVDNNDELNFSLTNNTTQLGMDS
  226-  303 (117.56/66.29)	VD.......ATQPMDDKKSIPVQ..ISTANTP.STTLPEGS..VSGLGLSDMDTllqQNPSTiTSAVTTQQPDELYHSTARSPSTLEKDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     120.03|      40|     313|     613|     662|       4
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  613-  662 (57.96/59.02)	AFGGenDGseeqqLSaamDDMIDDSNYTTDF.NTPTFIKAMQTIS.....KDDIFT
  929-  974 (62.07/37.68)	AMGG..DG.....IS...DDLLRTTNLQMLLqGTPTIIDRLLCIYdagriETETFT
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     159.66|      54|     186|     491|     585|       8
---------------------------------------------------------------------------
  491-  572 (68.48/113.72)	QNITSKTSVNEEhPNQATgveicnttvaanrllwknlvLVKLPHLiyclqehKKEEAARH.SLDRGLYQKSTQSRKDDESNAI
  680-  734 (91.18/51.12)	EGLTNGNSIKME.PNQDD....................LVKTEHL.......DDDERNQHkSLSSVPMDVDTADRQDGTSDAM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07229 with Med5 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LGMDSQLTFDPDATLDVDATQPMDDKKSIPVQISTANTPSTTLPEGSVSGLGLSDMDTLLQQNPSTITSAVTTQQPDELYHSTARSPST
2) SEGLTNGNSIKMEPNQDDLVKTEHLDDDERNQHKSLSSVPMDVDTADRQDGTSDAMAQVDQNIEQRMA
3) TASQRSRPLDNDGESDMDSDNDDTTKQQKVDNNDELNFSLTNN
210
679
164
298
746
206










Molecular Recognition Features






MoRF SequenceStartStop




NANANA