<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07221

Description ATP-dependent Clp protease proteolytic subunit
SequenceMATLLRRTTRPSASTGIGRNGTRPMSSQFGFPTHYAPQQQQQQQQQQQQRQQQRQQYAPRAAALPIPYVTETVGGGWKTSDIFSRLLQERIICLNGEVEESMSAMIVAQLLFLEADNPEKPISLYINSPGGSVSAGLAIYDTMNYIRSPISTICMGQAASMGSLLLCGGKAGQRYILPHARVMIHQPSGGYSGKASDIADHAKEILRVRERLNKIYQSHLTKKRSLEEIEKFMVGDYFMDAQEAVDFGIVDKILERREDAGKE
Length263
PositionTail
OrganismDidymella rabiei (Chickpea ascochyta blight fungus) (Mycosphaerella rabiei)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Pleosporomycetidae> Pleosporales> Pleosporineae> Didymellaceae> Ascochyta.
Aromaticity0.07
Grand average of hydropathy-0.452
Instability index64.35
Isoelectric point8.93
Molecular weight29296.05
Publications
PubMed=27091329

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP-dependent peptidase activity	GO:0004176	IEA:InterPro
serine-type endopeptidase activity	GO:0004252	IEA:UniProtKB-EC

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07221
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.95|      38|      58|      65|     106|       1
---------------------------------------------------------------------------
   65-  106 (52.83/55.81)	PIP.YVTETvGG....GWKTSDIFSRLlQERI..ICLnGEvEESMSAMI
  121-  165 (56.12/38.84)	PISlYINSP.GGsvsaGLAIYDTMNYI.RSPIstICM.GQ.AASMGSLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.55|      14|      19|     168|     181|       2
---------------------------------------------------------------------------
  168-  181 (26.92/17.69)	GGKAGQ.RYILPHAR
  189-  203 (21.63/12.92)	GGYSGKaSDIADHAK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07221 with Med15 domain of Kingdom Fungi
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