<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07215

Description Sequence-specific DNA binding
SequenceMATAVQPAMIMAPAFNPHINQCHDPEQEFFDFSQLPSPTQPGLKRESSSVSNIASPTSTTIEEELQEAAKPSHEYERFKQQTGIPSGSLTGLNAGYSSSYPIFSSSGLDMMGSDSVMDGAWNSGTGMDMNVGMDYTQPAYMFPNNDQDDFVDPSAIQQEEGPAVRLYPGMHQQQAALAKAQQQAQQQRQQQQIAHQRQQAQLHAQQQQQQQQQQQQQQQQQQQQQRAAPPSSSRKTSSPLSDDRTEATIARVVAQIRQESQNAALASHDANGNILPHIIRAKKDEEDMDEDERLLASEEGKKLSSKERRQLRNKVSARAFRSRRKEYIGQLEGEVAMKVNEANELRSQNRALMEENARSRAFIERLLRHQAFGPFLEDLVREEGITAQAPLASMPSSSTPVASAPPPAPFQQSFVSQSENTHVGMTMVPETQLDFSMLNINNTSSSSSNANWNMNNGFNGYQPRVFAVTELPEGPANPLDVSAMSGKGHSTIFAVEDEASADEDAKSDYPVIEYPVQSQQPLMAAVEEEDEDSEYDLYRSSPAPSASRSAPLEILFTNTEKTFGHFTLHVSNEATEALLAERLERKMAAMEPAFQRIAAITSMLDY
Length606
PositionTail
OrganismDidymella rabiei (Chickpea ascochyta blight fungus) (Mycosphaerella rabiei)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Pleosporomycetidae> Pleosporales> Pleosporineae> Didymellaceae> Ascochyta.
Aromaticity0.06
Grand average of hydropathy-0.759
Instability index76.79
Isoelectric point4.84
Molecular weight67164.27
Publications
PubMed=27091329

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
DNA-binding transcription factor activity	GO:0003700	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07215
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     104.19|      22|      22|     171|     192|       1
---------------------------------------------------------------------------
  171-  192 (42.52/17.83)	HQ.QQAALAKAQQQAQQQRQQQQ
  195-  216 (38.80/15.72)	HQrQQAQL.HAQQQQQQQQQQQQ
  243-  262 (22.87/ 6.70)	DR.TEATIARVVAQIRQESQN..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.52|      26|      29|     494|     522|       2
---------------------------------------------------------------------------
  494-  522 (37.90/23.57)	AVEdEAsaDEDAKSD.YPVIEYPVQSQQ.PL
  525-  552 (37.62/15.44)	AVE.EE..DEDSEYDlYRSSPAPSASRSaPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.92|      34|      41|     290|     329|       3
---------------------------------------------------------------------------
  290-  323 (54.87/28.21)	EDERLLASEEGKKLSSKERRQLRNKVSARAFRSR
  332-  365 (54.05/36.57)	EGEVAMKVNEANELRSQNRALMEENARSRAFIER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     133.65|      37|      41|      82|     120|       4
---------------------------------------------------------------------------
   35-   69 (48.17/26.51)	..LPSPTQPGLKRE..SSSVSNIASPTSTTI..EEELQEAA
   82-  120 (58.66/40.41)	TGIPSGSLTGLNAG..YSSSYPIFSSSGLDMmgSDSVMDGA
  125-  148 (26.81/10.95)	TGM......DMNVGmdYTQPAYMFPNNDQD...........
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07215 with Med15 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MGSDSVMDGAWNSGTGMDMNVGMDYTQPAYMFPNNDQDDFVDPSAIQQEEGPAVRLYPGMHQQQAALAKAQQQAQQQRQQQQIAHQRQQAQLHAQQQQQQQQQQQQQQQQQQQQQRAAPPSSSRKTSSPLSDDRTEATIARVVAQIRQESQNAALASHDANGNILPHIIRAKKDEEDMDEDERLLASEEGKKLSSKERRQLRNKVS
2) PEQEFFDFSQLPSPTQPGLKRESSSVSNIASPTSTTIEEELQEAAKPSHEYERFKQQTGI
3) TAQAPLASMPSSSTPVASAPPPAPFQQSFVSQSENTHVGMTMV
111
25
386
316
84
428










Molecular Recognition Features






MoRF SequenceStartStop




1) DSEYDLYRSS
2) YPVIEYPV
532
509
541
516