<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07204

Description Uncharacterized protein
SequenceMSGRHQAPYARYNQSNQPINSVKHNLNIPFNPQNNAQGIGHSSASSASYNNASSMASPYSSSSSPGHPSPNMAKHVTHNTQLKKYTLKPPPRLQPLSKTMTQLGYPGIFPQRSSQDEDVLTESNMRNGFNDRPIVSNEHTCAHDIVYGKLQDDQRLMNELGSFMVDVLKRKRKAAKVTGNTSFKPPLRSTLGDNKKDQWMQDLAGGTVPLRKLARNVPHGFKGEKLLETLALRQVPFLRASWYIKIVGLSEMTQRNANNTNPPVSQANQWTIIVISHLKKQLGELTATNTASHHNNTNSRGHKGHNNTSNHYDGSTKPWASPENRARFEQRWLYSTRLTRWQYCEGLLDQRTFLRSSLDTLLASGSFEVMWLILTGLVQDYVDEYRRNRTLMKLLIETLIKTYNALLSHTAQIHGDKSYWIYCGLQKEIKQMLQSLFLSTPDVFVIPKLYHQYRDVFDAILGEDNSESALQTIPDVCNTMKKYWNIVKARNEVFCGTAEENKIKQDGNSREDKKTTAQNLTEEVRDGEHVVHVLDNIGRHVGSHSGLLIDQNGWMSVNGKTAKSAAKAIFGTGDVDQQAFVHIIKTMCQWATSDARYGDWRPYLIASILLHWRDSSKTTERKTMLQDSFIRFLDEESLSDETEIQNSDEINANNDPTFESSTLIRLQLFSYQKYLLRLIARGELEPSQRHKRSIRQSLHYLASFPLLTPPPAGLVHQRRVAIYGVRNVNGDYQEKEDLSHMKRLAKLSMTGNMENESFLFGENSREMTSPEPSDSIASFDITLLDKYIQEIAQTMQNSTRYVVQLFCDWMVDQVMRFVVKSVQIGEDNWRVMTTPGSCLLNTRQYITIIKILEHAKDYTNIVQIALWVLKKTNERALYLYIIDSLRKYASIWKLTNYSNQVAEALWEKHQDLQARGIRERCIMMYIVQLVQEGYRISDERRAQLQHDLQAKPKFMSRHRSNPLPITAELGQIIQDHSPSNIQSVTDSLCVRYQGTAGWIGIILQGIVEVMSPVGAVRRIELATSKVPAKETQDSFARSFEFYQIVSAFASLMEEISNQATITGELDEAIAGWLSRQCSPTTMNGTILIDEMNQEYSWVPLFITLLVVHGCVSLEIVLKDFAIPWFRHISQETQQANGTDAAEHRVLQFSKNLVALVRLLVVREQCKPNFEDAINTSQPWILRIEDIFRLETSRQTYLTSGLDKIEPLFGLMEYLVIIGANLPLSSTLLRELVMLRADMLKVERFRQACIRDLDGVYQRFATQDVGGANERKTKKKMLSIVDELIGGNPCFERQGMAHDLAPSFVEKLSHIFMNVSQWNEELCRVQVNLLLDNILLSDGSSSNPNNPHILGDDSTTNLATTPGMDSILRSTPTSTNEELVLFVDFSFNMALSDDSNDKKSQKSQRRFTFLKNMLNGIREPVLSELLSHGVRLLEGCGATTFPENVLLLTTEGCIPTSFESAKFSRRSHAFLNIMQHMIAEDVWTSSKKIELLKTLHVQIKRYKDGADVYKVMEGAQVSYNNAIRAMSLVKNNVDMAIALLMNDGIPGNSRDTQGIDVMLQDIRTSLLVRLKLVVPFAALIWEHPKAEECDILEWVKVLVSLLGNPLVHGNGSQEKFFEFVLDLVSLLIDEVPRELRKPNLLHLSSMNGELAFLPSMFLSRVKRILPFLTHNIYITSTRLASSLLGSQSSNITPQQQQQHLENCMEHSKPWEWLEDYVSDPPAENDAPINISLFDARKVKKAEGTYAKWYKSGFSDKLASEDDHDEPLRVSLIGKSRKRSVDTMEDNGFIFIVDDDEDVNSTTTPKRRLIDMEEGELP
Length1816
PositionKinase
OrganismPhycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555)
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Mucoromycotina> Mucoromycetes> Mucorales> Phycomycetaceae> Phycomyces.
Aromaticity0.08
Grand average of hydropathy-0.389
Instability index43.89
Isoelectric point6.72
Molecular weight206357.58
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07204
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     672.14|     187|     521|     648|     836|       1
---------------------------------------------------------------------------
  260-  374 (113.89/83.18)	......................................................................TNPPVSQANQWT.I..IV...............ISH.LKKqLGELTATntashhnntnsrghkGH.NNTSNHYD...GS..TKPWASPENRA...............RFEQRWLYSTRLTRWQYCEGLLDQ.RTFLRSSLDtlLASGSFEVMWLIL
  376-  573 (250.99/195.80)	GLVQDYVDEYRRNRTLMKLLIETLIKtYnaLLSHTAQIHGDKSywiycglQKEIKQMLQSL.FLSTPDVFVIPK..LYHQYRdVfdAILGEDNSESALQTIPDVCNtMKK.YWNIV..................KARNEVF.CGtaeENkiKQDGNSREDKKTTAQ.NLTEEVRDGEHVVHVLDNIGRHVGS.HSGLLIDQNGWMSVNG.K..TAKSAAKAIFGTG
  648-  836 (307.26/253.07)	DEINANNDPTFESSTLIRLQLFSYQK.Y..LLRLIARGELEPS.......QRHKRSIRQSLhYLASFPLLTPPPAGLVHQRR.V..AIYGVRNVNGDYQEKEDLSH.MKR.LAKLSMT...............GNMENESFLFG...EN..SREMTSPEPSDSIASfDITLLDKYIQEIAQTMQNSTRYVVQLFCDWMVDQVMRFVVKSVQ..IGEDNWRVMTTPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     460.20|     155|     467|     978|    1169|       2
---------------------------------------------------------------------------
  978- 1169 (237.11/202.40)	PSNIQSVTDSLCVRY........QGTAGWIGIILQGIVE.VMSpvgAVRRIE.LATSKVPAKETQDsfarSFEFYQIV.SAFASLMEEISNQATITGELDEAIAgWLSRQCSPTTMNGTILIDEMNQE..............................YSWVPLFITLL...VVHGCVSLEivlkdfaipwfrhisqetqqangtdaaehRVLQFSKNLVALVRLLVVREQCKPNF
 1441- 1639 (223.09/130.76)	PENVLLLTTEGCIPTsfesakfsRRSHAFLNIMQHMIAEdVWT...SSKKIElLKTLHVQIKRYKD....GADVYKVMeGAQVSYNNAIRAMSLVKNNVDMAIA.LLMNDGIPGNSRDTQGIDVMLQDirtsllvrlklvvpfaaliwehpkaeecdiLEWVKVLVSLLgnpLVHGNGSQE.............................KFFEFVLDLVSLLIDEVPRELRKPNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     156.22|      45|     724|     582|     628|       3
---------------------------------------------------------------------------
  582-  628 (76.30/54.15)	HIIKTMCQWATSDARYGdwRPYLIASILLHWRDSSKTTERKTMLQDS
 1309- 1353 (79.92/49.20)	HIFMNVSQWNEELCRVQ..VNLLLDNILLSDGSSSNPNNPHILGDDS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07204 with Med12 domain of Kingdom Fungi
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