Description | Mediator of RNA polymerase II transcription subunit 17 |
Sequence | MEEKGPPLSLRPFPIANREPKDLAEFIARVNTQPGGFRALSVQKLRDDIVARDSPNAADSDQDDGDVSDGGGGGGGNEEEPARDPILARAEVLKNIEIAGNTAMLTLDSLSLLLSKQSPTQAGLTLSQQLREMVGIGTLGADRLDEPMVNPHKAEDEEEVALGWTLMQINETRDAAEAAGKLLQREVEAESKYWEDVVAVKRCGWSICRVPRSRDMLGVRFGFSEAAADFKNNGSAPMKRGDGGSVELDLGRLGGVSEGLAVSYERDGKLVGRSVLRPPAGRDNSLEAKVLEARNTIFSQELWHELGLEARTLAGYGVRRQGSKLTWPLDTSSRITLELVPLDSDGVVKDEEALPESYVAEGMHVALHVLLSYAHRYNELMRTRPMPSHISRTRGQQVYALLRPIIARMTSISNMTQCASLLGDMTGALERAGFSPSFVLKTAPYSTTGAQGPNQPGAAQALVRSMLLQPIEFHFDFTVTPQASLTIRGRTFLFPVTTTVYHVLLPAASPLHATCAPCADGEMDVRGLSDYLRAAVGQMLAHHFVDGGHEVHFSVEGGNDHLADGGFVVAVTAVTAGQAWTAASHAGKKSSWSWSRQGPSESRSMEQVVMEATSLSL |
Length | 617 |
Position | Head |
Organism | Moelleriella libera RCEF 2490 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Clavicipitaceae> Moelleriella. |
Aromaticity | 0.06 |
Grand average of hydropathy | -0.263 |
Instability index | 42.20 |
Isoelectric point | 5.39 |
Molecular weight | 66573.36 |
Publications | PubMed=27071652 |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364140 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP07166 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 180.73| 58| 316| 227| 293| 1 --------------------------------------------------------------------------- 227- 286 (95.40/82.99) AADFKNNGSA...PMKRgdGGSVELDLGRL...GGVS..EGLAVSYERDGKLVGRSVLRPPAGRDNSL 315- 380 (85.33/53.83) GYGVRRQGSKltwPLDT..SSRITLELVPLdsdGVVKdeEALPESYVAEGMHVALHVLLSYAHRYNEL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 28.20| 11| 15| 156| 168| 3 --------------------------------------------------------------------------- 156- 168 (10.99/15.05) DEEEVAlGwTLMQ 174- 184 (17.22/ 8.18) DAAEAA.G.KLLQ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 65.08| 18| 385| 199| 216| 4 --------------------------------------------------------------------------- 199- 216 (37.50/23.31) AVKRCGWSICRV.P.RSRDM 586- 605 (27.58/15.44) AGKKSSWSWSRQgPsESRSM --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) GFRALSVQKLRDDI 2) PPLSLRPFPIANREPKDLAEFIARVNT | 36 6 | 49 32 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab