<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07159

Description Uncharacterized protein
SequenceMASTPLLPPNAAAGNPNFDGNARATPAPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNETIRMRSIHPLDHSHLSKMTGIEYALSEVTEPHLFVIRKQKRDSPDKVTPMLTYYVLDGSIYQAPQLCNVFASRVGRALYHISKAFTTAASKLEKIGYVDTENESATLLAKAPKETIDLKEVKRIDHILASLQRKLPPAPPPPPFPEGYNPPKSAEGENASEAQAQLPPVDPILDQGPSKRMKF
Length254
PositionHead
OrganismDaucus carota subsp. sativus (Carrot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Apiales> Apiaceae> Apioideae> Scandiceae> Daucinae> Daucus> Daucus sect. Daucus.
Aromaticity0.09
Grand average of hydropathy-0.441
Instability index51.13
Isoelectric point6.60
Molecular weight28234.87
Publications
PubMed=27158781

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07159
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.66|      10|     196|       7|      18|       1
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    7-   18 (16.90/10.09)	LPPnaAAGNPNF
  206-  215 (23.76/ 9.56)	LPP..APPPPPF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07159 with Med6 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SLQRKLPPAPPPPPFPEGYNPPKSAEGENASEAQAQLPPVDPILDQGPSKRMKF
201
254










Molecular Recognition Features






MoRF SequenceStartStop




1) EVKRIDHILASLQRKL
2) ILDQGPSKRMKF
191
243
206
254