<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07155

Description Uncharacterized protein
SequenceMAGFEPGNNLEKWRSYFRTCSGSDIFDIIENGILVAATDCPQEFKARRDRIAETLFSSKLTKCVGCDRVDLSVASEDRKVDEGSKESKVESFSDDRNGGMNVNKFENDYSYRDAEALTDELEEESRRFGEVLRIKDILENHNEATSLVFESLQRLELMPLSVEVLQVTEIGKAVKAVRKHPSTDIRNLANKLLRVWIALVDEWVETRKTIAGDLEGGTPESMNPSIVDEDERLPTPPYEDLAFFATHDSSMEFSQFFDGLEDELNPQNCEELNKNTESGRKARVERNNISKPRQQPLGGSGATPKFKKEELNKKDAEALMNKQATLVKPNKPPIVKSGFDRPAKPSLENKVLSEIKLQRKSDLTSQRPPIPKQKETKSSDEDKLEATKRKLQERYQEAQNAKRQRTIQVMELHDLPKQGLGHRNPHVRPGNRNGSHNRHGTIRRR
Length445
PositionUnknown
OrganismDaucus carota subsp. sativus (Carrot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Apiales> Apiaceae> Apioideae> Scandiceae> Daucinae> Daucus> Daucus sect. Daucus.
Aromaticity0.05
Grand average of hydropathy-0.927
Instability index47.41
Isoelectric point6.52
Molecular weight50626.23
Publications
PubMed=27158781

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07155
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     141.86|      34|      35|     326|     360|       1
---------------------------------------------------------------------------
  291-  323 (46.15/20.80)	..KPRQQPLGGSGATPKFKKEELNKK.DAEALMNKQ
  326-  360 (52.36/28.07)	LvKPNKPPIVKSGFDRPAKPSLENKV.LSEIKLQRK
  363-  394 (43.34/19.40)	L.TSQRPPIPK...QKETKSSDEDKLeATKRKLQER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.48|      36|     106|     146|     182|       2
---------------------------------------------------------------------------
  146-  182 (54.91/38.06)	SLVFESLQRlELMPLSVEVL.QVTEIGKAVKAVRKHPS
  254-  290 (58.57/36.41)	SQFFDGLED.ELNPQNCEELnKNTESGRKARVERNNIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      61.24|      14|      15|      75|      88|       3
---------------------------------------------------------------------------
   75-   88 (22.69/12.09)	SEDRKVDEGSKESK
   93-  104 (19.62/ 9.57)	SDDR..NGGMNVNK
  113-  126 (18.93/ 9.00)	DAEALTDELEEESR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07155 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LNPQNCEELNKNTESGRKARVERNNISKPRQQPLGGSGATPKFKKEELNKKDAEALMNKQATLVKPNKPPIVKSGFDRPAKPSLENKVLSEIKLQRKSDLTSQRPPIPKQKETKSSDEDKLEATKRKLQERYQEAQNAKRQRTIQVMELHDLPKQGLGHRNPHVRPGNRNGSHNRHGTIRRR
264
445










Molecular Recognition Features






MoRF SequenceStartStop




1) HNRHG
436
440