<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07153

Description Uncharacterized protein
SequenceMANNPQAPGGQTLRPPSVGPMGSQNFGAPYPMQFRPMAPALQGQHPMPVSSASQQFSPAGQVMHPGQGQQPLQYSQPMQHLQSRPLQPGPVPPSQATQMPYLQQNMTYASGQQQYQQAAPANGHGYGGPGVPLSSSYTYTASYGQPQNTMNMPPQFQPASQIQMPAVPVGGQPWLPPISQGLPAATPMQPIAQQPAASPGPVTVVSSPHTSSDWQEFEASDGRRYYYNKITKQSCWEKPLELMTPLEKADASTVWKEFTTAEGRKYYYNKITKQSKWSIPDELKLAREQAEKAAGDGSQSESVIATSGTAKEMVDVLTTAPPSNEVASTTVGVASSPVPVTPVSAPLMTISESATPVVNVAADTTTATVAGSVGLSNASVNVNTTPVTGSETPVSRDAGNSSEGASVQDIEEAKKGKADAGKINSTPVEDKTVEDEPFLYANKQEAKNAFKALLESANVEADWNWEQAMRVIINDKRYGALKTLGERKQTFNEYLMQRKKLEAEERRLRQRKAKEEFTKMLEESRELTSSMRWSKAATLFENDERFKAVERAADREDLFKNYLVDLQKKEKMKAQEEYRQNRLDYRKFLETCGLVKVDTQWRKVQDRMEESESGSRLEKIDRLEIFQARCYKSSGHVGQQVGCILEQVKRVERKNRDEFRKMMEVDVASGNFTAKTLWFDYCQKVKDSAPYHAVALNLSGSTPKELFEDVSEDLQRQYDEDKANLKDALKSAKAGHYAYRFFICFSYYIPLKVITVESSWTFEDFKTAIAEIIDSLSISSINLQLVFEDLLERVKEKEEKEAKKRQRLAEDFSDKLRTIKDITASSEWDECKQLFDSSSEYRAIKEESSARQIFEEHIARLQEKARDKERKREEEKAKKEKEKEEKEKRKERERREKEKEKEHEKDNETSVERSKDNNEGENLDAADNYVHKEDKKREKDRERKHRKRHHNDVNSEEDEKEDSYKKSRRHGSEDEKEHSKKSRRHGSDDENDDGKKSRRHGSEDEIEDTKKSRRHGSGRKKSRKHAYTPESDGESRHKRHRRDHRDGSRRTGGHDELEDGELGEDGEIQ
Length1069
PositionUnknown
OrganismDaucus carota subsp. sativus (Carrot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Apiales> Apiaceae> Apioideae> Scandiceae> Daucinae> Daucus> Daucus sect. Daucus.
Aromaticity0.07
Grand average of hydropathy-1.096
Instability index58.15
Isoelectric point6.46
Molecular weight121326.34
Publications
PubMed=27158781

Function

Annotated function 
GO - Cellular Component
cytosol	GO:0005829	IEA:EnsemblPlants
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07153
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     132.17|      33|      39|     211|     249|       1
---------------------------------------------------------------------------
  211-  243 (68.29/31.19)	SSDWQEFEASDGRRYYYNKITKQSCWEKPLELM
  252-  284 (63.87/35.72)	STVWKEFTTAEGRKYYYNKITKQSKWSIPDELK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     145.31|      27|      27|     961|     987|       2
---------------------------------------------------------------------------
  927-  961 (26.90/ 8.75)	DNYvhKEDKKREKDRERKHRK...RHHNdvnseedekE
  962-  991 (45.50/19.44)	DSY..KKSRRHGSEDEKEHSKKSRRHGS......ddeN
  992- 1017 (41.52/17.15)	DDG..KKSRRHGSEDEIEDTKKSRRHGS..........
 1032- 1058 (31.38/11.32)	DGE..SRHKRH....RRDHRDGSRRTGG.....hdelE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     250.65|      43|      43|      31|      73|       3
---------------------------------------------------------------------------
    2-   51 (67.44/32.93)	ANNPQAPGGQTLRPpsvG.pMGSQN........FGapyPMQF...RPMA..PA...LQGQHPMPVSS
   52-   95 (65.68/31.90)	ASQQFSPAGQVMHP...G..QGQQP........LQysqPMQHlqsRPLQ..PG........PVPPSQ
   96-  135 (57.06/26.85)	ATQ.MPYLQQNMTY...A..SGQQQ................Y...QQAA..PAnghGYGGPGVPLSS
  136-  154 (22.41/ 6.53)	SYTYTASYGQ............................PQNT...MNMP..P...............
  155-  204 (38.07/15.71)	...QFQPASQIQMP...AvpVGGQPwlppisqgLPaatPMQ.....PIAqqPA......ASPGPVTV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.54|      16|      20|     867|     886|       4
---------------------------------------------------------------------------
  881-  898 (23.60/10.09)	KEKE.EKekRKERERRE....KE
  899-  919 (16.93/14.18)	KEKEhEK..DNETSVERskdnNE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     264.10|      53|      78|     496|     548|       5
---------------------------------------------------------------------------
  449-  515 (71.73/35.76)	AF.KALL...ESANVEADWNWEQAMRVIINDKRYGA.....lktlgerkqtfneylMQ.RK.KLEAEER....RLRQRKAKE
  516-  590 (61.00/29.39)	EFTKMLE...ESRELTSSMRWSKAATLFENDERFKA...veraadredlfknylvdLQ.KKeKMKAQEEyrqnRLDYRKFLE
  600-  657 (44.66/19.68)	QWRKVQD...RMEESESGSRLEKIDRL....EIFQA...rcykssghvgqqvgcilEQ.VK.RVE............RKNRD
  658-  716 (29.30/10.57)	EFRKMMEvdvASGNFTAKTLWFDYCQKVKDSAPYHAvalnlsgstpkelfedvsedLQ.R......................
  811-  879 (57.40/27.25)	DFSDKLR...TIKDITASSEWDECKQLFDSSSEYRA.....ikeessarqifeehiARlQE.KARDKER....KREEEKAKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     107.93|      17|      21|     300|     316|       6
---------------------------------------------------------------------------
  300-  316 (24.11/13.23)	SESVIA.TS.GTAKEMVDV
  323-  340 (20.70/10.34)	SNEVAS.TTvGVASSPVPV
  344-  360 (22.34/11.73)	SAPLMT.IS.ESATPVVNV
  366-  382 (21.90/11.36)	TATVAG.SV.GLSNASVNV
  390-  407 (18.88/ 8.79)	SETPVSrDA.GNSSEGASV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07153 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IPDELKLAREQAEKAAGDGSQSESVIATSGTAKEMVDVLTTAPPSNEVASTTVGVASSPVPVTPVSAPLMT
2) MANNPQAPGGQTLRPPSVGPMGSQNFGAPYPMQFRPMAPALQGQHPMPVSSASQQFSPAGQVMHPGQGQQPLQYSQPMQHLQSRPLQPGPVPPSQATQMPYLQQNMTYASGQQQYQQAAPANGHGYGGPGV
3) QIFEEHIARLQEKARDKERKREEEKAKKEKEKEEKEKRKERERREKEKEKEHEKDNETSVERSKDNNEGENLDAADNYVHKEDKKREKDRERKHRKRHHNDVNSEEDEKEDSYKKSRRHGSEDEKEHSKKSRRHGSDDENDDGKKSRRHGSEDEIEDTKKSRRHGSGRKKSRKHAYTPESDGESRHKRHRRDHRDGSRRTGGHDELEDGELGEDGEIQ
4) SSYTYTASYGQPQNTMNMPPQFQPASQIQMPAVPVGGQPWLPPISQGLPAATPMQPIAQQPAASPGPVTVVSSPHTSSDWQEFE
5) TVAGSVGLSNASVNVNTTPVTGSETPVSRDAGNSSEGASVQDIEEAKKGKADAGKINSTPVEDKTVEDEPFL
279
1
852
135
368
349
131
1069
218
439










Molecular Recognition Features






MoRF SequenceStartStop




1) ELGEDGEIQ
2) KKSRKHAYT
1061
1020
1069
1028