<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07142

Description Uncharacterized protein
SequenceMTLTSLYHAVSHSMIRVPDIALKGLMDSRGDIVEEIAVGEEEMVYVSVSKNVKESESTLKWAVRNFHGKKLCILHVHQPSKKKPSMGTKYSFSRLKDHQARTYHDTERQHMQSVLETYGLICERAGVWAETLHIEMDSIEKGIVELISMNNIRRLVMGAAADKLYSKKMIELKSKKAIYVCQKAPMSCHIWFVCNGNLIYTSYVTNGTKLYRRGDLDKASGKVFSPPPPLPSNCHVQSSSPRQSSGQEWRCSELAISASQFPKVRSAISSQDASGGTTPSSSLNNERNLYAWDNISRSDSADSFVSPRSSIEVVENSSLLKFSRPERSRNGIEFRAILNCDEGLYNSSPPSAQVCETYQEEIASDKLYDELEKTMAEAENSRQKAFEETIKCRKAEKRATEAILRAKASESSFTEELKQKKELEEALASGKEEIEKLKPKLDEIMKELQFALEQKSSLEFQIRDSNETVQELEQKIFSAVHLLQRYKKERDELLVERDNAVGLAEGLKKNPVEDTSIARVTQFYTEFSLSEIEAATHGFNPSLKIGEGGYGNIYAGILRHTQVAVKVPHSNSLQGPLEFEQEVNVLSTLRHPNLVTLIGACSEARILVYEYLPNGSLEDRLNCKENTPPLSWQTRVRIAAELCSVLVFLHSCKPRSIIHGDLKPSNILLDTNHVSKLSDFGTCSLISRDELSSNNTTICCRPDYAKGTFPYIDPEYLSTGELTRKSDVYSFGIILLRLLTGRPALGIAKDVQSALDKGNLKDLLDCTAGDWPFVRAKQLAQLALSCCEMSRNKRPELISEVWRMLEPMKFSCGASSFKRGSEDHLQIPHFYMCPIFQEIMQDPVVAADGYTYETEAIKGWLESGNDKSPMTDRKLANDILVPNHALRSAIQEWLQKS
Length897
PositionTail
OrganismDaucus carota subsp. sativus (Carrot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Apiales> Apiaceae> Apioideae> Scandiceae> Daucinae> Daucus> Daucus sect. Daucus.
Aromaticity0.07
Grand average of hydropathy-0.433
Instability index51.19
Isoelectric point6.39
Molecular weight100809.55
Publications
PubMed=27158781

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07142
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     134.51|      45|     244|     471|     515|       1
---------------------------------------------------------------------------
  422-  467 (64.27/48.54)	ELEEALASGKEEIEKLKPKLDEIMKELQFALEQKSSLEfQIRDSNE
  471-  515 (70.23/53.81)	ELEQKIFSAVHLLQRYKKERDELLVERDNAVGLAEGLK.KNPVEDT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     103.28|      25|      27|     268|     292|       4
---------------------------------------------------------------------------
  268-  292 (42.72/26.64)	ISSQD.ASGGTTPSSSLNNERN..LYAW
  295-  322 (28.93/15.63)	ISRSDsADSFVSPRSSIEVVENssLLKF
  323-  345 (31.62/17.77)	SRPER.SRNGIEFRAILNCDEG..LY..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.40|      21|     157|      72|      95|       5
---------------------------------------------------------------------------
   72-   95 (31.48/25.75)	CilHVhQPSKKKPSMGTKYSFSRL
  234-  254 (41.92/22.70)	C..HV.QSSSPRQSSGQEWRCSEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     136.63|      42|      50|     576|     619|       6
---------------------------------------------------------------------------
  576-  619 (64.29/64.97)	PLEFEQEVNVLSTLrhPNLVTLIGACSEARILVYEYLPNGSLED
  629-  670 (72.34/63.84)	PLSWQTRVRIAAEL..CSVLVFLHSCKPRSIIHGDLKPSNILLD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07142 with Med32 domain of Kingdom Viridiplantae
Unable to open file!