<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07140

Description Mediator of RNA polymerase II transcription subunit 4
SequenceMDKVIDARFERVEKALASLIESVSKYHPHAKQALDLHEADNDLAKGLDEVQTHQNNHLHLQQLRATTSSLDTQIRETLQSLATTRKDITTTQITVYPDGPKYPVKYDELLNYARRISKTTLPPAALTNGGGVTTGGDTPAPDPNASMTTNPNTPGANGPQSQPVSAAPTPSQSQTPGPSGAPNSSPLQDALQGTQQTTTTSGATSLPDGLRNHLDPHFNASFIPWPNEFQIRSGAMAVYQDLADKGIDPRGYDPQQIAEVKRKEEEERKAREEQEKLEIERKNREYQEKMEKIRREQQEAYRRDSVAAGAGASSAGKSKQFQFTSLMDDDDDDE
Length334
PositionMiddle
OrganismColletotrichum tofieldiae
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Glomerellales> Glomerellaceae> Colletotrichum> Colletotrichum spaethianum species complex.
Aromaticity0.05
Grand average of hydropathy-0.973
Instability index49.47
Isoelectric point5.23
Molecular weight36760.91
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07140
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.11|      20|      20|     153|     172|       1
---------------------------------------------------------------------------
  133-  150 (31.94/16.11)	TTGGDT.PAPDP..NASMTTN
  153-  172 (37.07/19.87)	TPGANG.PQSQPVSAAPTPSQ
  175-  195 (33.10/16.96)	TPGPSGaPNSSPLQDALQGTQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.67|      17|      30|     201|     217|       2
---------------------------------------------------------------------------
  201-  217 (31.80/17.60)	SGATSLPDGLRNH.LDPH
  233-  250 (25.87/13.20)	SGAMAVYQDLADKgIDPR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.00|      11|      29|     262|     272|       3
---------------------------------------------------------------------------
  262-  272 (17.19/11.23)	RKEEEERKARE
  294-  304 (17.80/11.87)	RREQQEAYRRD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07140 with Med4 domain of Kingdom Fungi
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