<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07139
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MDGRVVRGVQRAALEKWSEFIARSLAHRIDPDKFESYIPFLQVKHPLPPVAVADLFLRPQPHNHESLDPRVPRYLQVLSDLNYIDTPSILKALYKYSTSRTHSRDAAQPANGETQRSNIPRWGSSYAAEEVMFYRLTKSVAQGTAIQNTGTGLEIANIMAKWIALFTDAATAFTVDVMGQLHNSQVREEMESARAAFVALLLGVCENQVVLKTLSKPEAQDTRKALSESLANFVPTIMQSAGPIATRLDMFRTSTLAGFEPVDEQKNKSNAEIEDLFDSTVALENFVISELPIVNSRAGLYIYLNAALVGRPLIDDLAIFNYLNNRYQGDVQSTTVDLILASFDVLANAASRNEGNQAAHLLRSFLMNKLPILIESLSKHMYGPVNAEYCITEALGRVDTTTFPTLSSMFDETRSNNPFTDSVREEFCWACCLHGLVRESSIETLLGETPYQSLPTGGRYVKENLVAECLADPERMQALIGELDNKDGNAGAVCQALTEVMGQLCRNKETMSLKLLCSQLAQKPLSLDVMLMFEKPATILHPLCDLLDNWKYDEDQGEYQPVYEEFGSILLLVMAFAYRYGLSASDMGVTSSDSFVARLLGQGHQSRPFDELSDQEKGHLNGWIHGLFDSEAGGLGDELMSSCPPQDFYLLVSTLFQNIVLAFSTGHLAEESLRGGIEYLVDTFLLPSLVVAITYLANSLWVERSDCQKAIVRVLNSVLAPTSISNEAQAMLTSVMNIVAKPLEHSLRAYQRSDPKSQEVEPLLKAIKDSIPLSRRTGAADHTELDAWSLGGFSNSIRQTLQQLVQWSIHPTMDRMPPAYTHRQMLVALKLLGAKRLLQLLYEDIRQQTDTGSGSIIYDVATAIVCAPDVVNTPSNPVNFLDNSGNMPAPVQRKLTLREVLKSDAEDCKRLQKTDMNLAEIVVRLHRKVESQMAVSQAQAIQADTMLQNDLGLGLDTGAGSLDDAMAAAAANVAQGDGMSVDNVSLDLGLGGVGGDMGLGGSSNNGGGSLDLGTDDIFSGLGAGDDFQWDNMDLS |
Length | 1035 |
Position | Tail |
Organism | Colletotrichum incanum |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Hypocreomycetidae> Glomerellales> Glomerellaceae> Colletotrichum>
Colletotrichum spaethianum species complex.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.123 |
Instability index | 41.78 |
Isoelectric point | 4.85 |
Molecular weight | 113463.46 |
Publications | PubMed=27189990
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP07139
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 58.25| 16| 21| 985| 1004| 1
---------------------------------------------------------------------------
985- 1000 (30.84/20.98) SLDLGLGGVGGDMGLG
1009- 1024 (27.41/ 9.23) SLDLGTDDIFSGLGAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 60.43| 15| 45| 60| 74| 2
---------------------------------------------------------------------------
60- 74 (30.52/18.00) QPHNHESLDPRVPRY
108- 122 (29.91/17.52) QPANGETQRSNIPRW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 98.36| 35| 45| 602| 642| 3
---------------------------------------------------------------------------
602- 642 (57.24/42.07) QGHQ...SRPFDELSDQ.EKGHLNgwihglFDSEAGG...LGDE.LMSS
646- 688 (41.12/19.27) QDFYllvSTLFQNIVLAfSTGHLA......EESLRGGieyLVDTfLLPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 51.47| 15| 16| 744| 758| 4
---------------------------------------------------------------------------
744- 758 (27.05/17.31) EHSLRAYQRSDPKSQ
761- 775 (24.42/14.90) EPLLKAIKDSIPLSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 46.34| 14| 16| 692| 705| 5
---------------------------------------------------------------------------
692- 705 (24.24/15.11) AITYLANSLWVERS
710- 723 (22.10/13.16) AIVRVLNSVLAPTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 83.03| 23| 23| 464| 486| 7
---------------------------------------------------------------------------
431- 452 (16.34/ 6.68) .....CclhgLVRESSIETLLGET.PYQ
464- 486 (40.20/27.89) NLVAEC....LADPERMQALIGEL.DNK
489- 508 (26.50/15.71) NAGAVC....QALTEVM....GQLcRNK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 90.13| 23| 25| 217| 239| 8
---------------------------------------------------------------------------
217- 239 (39.86/21.78) PEAQDTRKAL..SESLANFVPTIMQ
243- 265 (30.78/15.38) PIA..TRLDMfrTSTLAGFEPVDEQ
271- 287 (19.49/ 7.43) AEIEDLFDS...TVALENFV.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 60.24| 19| 26| 937| 956| 9
---------------------------------------------------------------------------
937- 956 (28.29/23.58) QAQAIQADTMLQNDlGLGLD
964- 982 (31.96/21.50) DAMAAAAANVAQGD.GMSVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 60.09| 18| 26| 169| 186| 10
---------------------------------------------------------------------------
169- 186 (30.64/19.39) AATAFTVDVMGQLHNSQV
193- 210 (29.45/18.36) ARAAFVALLLGVCENQVV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 74.21| 23| 28| 533| 557| 12
---------------------------------------------------------------------------
533- 557 (38.12/37.59) FEKPATILhpLCDLLDNWKYD...EDQG
563- 588 (36.10/26.13) YEEFGSIL..LLVMAFAYRYGlsaSDMG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 24.27| 8| 20| 339| 348| 13
---------------------------------------------------------------------------
339- 348 ( 9.19/12.05) ILASFdvLAN
361- 368 (15.08/ 9.26) LLRSF..LMN
---------------------------------------------------------------------------
|