<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07122

Description Uncharacterized protein
SequenceMENSLGSLSDPDSDSIHQMDVHRLDGLWNHLIRSASKLSNFTTSGIDGTVAFIDPLRQILDLFMEVVAAIQDEVVVIKLLWSLDRGIERRLFTPLIVVNAILPRRELTVENRVFFRSVFRFLLKLVFFLDYKNNRFVFSKTIEKSCLFYAPSSKGRSLYAYDLYPAVELIQVLLCREINLLPAYFTMHELNTKFRGDKSTRPHNLIEPEVERFMAEFDFPLRILYSYPHPMSLCFVLLRGQFQHFSTGAVGAAGQGAATPKTPTSQHPHAWRNATRVDKVTCQLIIRCLLWAHQALAVRANANRECAQAFVDTDHKVTGLLSPPAWSTLELLHEAAMKEAGDISTYTDVDSADCIRAAYGADAEIRLASALQSTSEDGFPDLEDHLARIMEPVVKSTEKHGLHGSPSAWRSWRTEENVNPQAAGLYAVAIELMVLHPPSDTSRVLAAASALIECLRKRSGAGNFTNWLNVTGALVSILPFVFRHNILCQICNLIHDPCFGDSDLWPSALVTVKMGDSPSPSTSPEPLRRLLEVFRRRRSLTGQPLPLTVFEDEVEDPNDGTWEVLGRPHASAVLFFEKILPPQFPKGQELPNHNFKAAIWHAIWSHANLNENPTLLRVFDEFVLKYVNNEAKLLMAFSLITPPMKALNTDNSTKVVDLTVSLYKAVQQVDEALAAKNVPMYHVNTIADLLYHIKYTFVGNAVKEKVQGLLGQMRPRLQACLKFVFPTPITTNTSPTLPPGNANDSAPHNPVLFPVFEEREYRAALRPPACLGDDFF
Length776
PositionTail
OrganismMesocestoides corti
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Cestoda> Eucestoda> Cyclophyllidea> Mesocestoididae> Mesocestoides.
Aromaticity0.09
Grand average of hydropathy-0.073
Instability index49.40
Isoelectric point6.35
Molecular weight87045.94
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07122
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.96|      25|     136|     259|     283|       1
---------------------------------------------------------------------------
  259-  283 (47.90/23.59)	TPKTPTSQHPHAWRNATRVDKVTCQ
  397-  421 (48.06/23.69)	TEKHGLHGSPSAWRSWRTEENVNPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     205.73|      61|     144|     548|     621|       2
---------------------------------------------------------------------------
  548-  621 (98.99/91.00)	TVFEDEVEDPNDGtweVLG..RPHASAVLFFEKILPPQFPKGQELPNHNFKAAIWHaiwshanlneNPTLLRVFDE
  696-  758 (106.74/68.54)	TFVGNAVKEKVQG...LLGqmRPRLQACLKFVFPTPITTNTSPTLPPGNANDSAPH..........NPVLFPVFEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     181.32|      50|     421|      32|      81|       3
---------------------------------------------------------------------------
   21-   75 (70.22/44.95)	VHRLdgLWnhlIRSASKLSNFTTS.GIDGTVAFIDPLRQILDLFMEVVAAIQDEVV
  455-  499 (64.18/40.43)	...........LRKRSGAGNFTNWlNVTGALVSILPFVFRHNILCQICNLIHDPCF
  500-  534 (46.91/27.48)	GDSD..LW......PSALVTVKMG.DSPSPSTSPEPLRRLLEVF............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     124.52|      41|     498|     121|     168|       6
---------------------------------------------------------------------------
  121-  168 (63.08/54.54)	FLLKlvffldYKNNR....FVFS.KTIEKSCLFYAPSSKGRSLyAYDLYPAVE
  622-  667 (61.44/36.19)	FVLK......YVNNEakllMAFSlITPPMKALNTDNSTKVVDL.TVSLYKAVQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07122 with Med23 domain of Kingdom Metazoa
Unable to open file!