<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07121

Description Uncharacterized protein
SequenceMVLERGRVTFTVPHEFKVTLTMLSEALDFPWRIISVEFLVSDPEKNISGPLIHPRQTRFLVQQAQSRILYQSFDKRPPLVHLYDMLHAFATSLQLDVLYEQAQRLRSRRPTDPFNIECYRPGQLLKVIYWRGLTNCNYQAVMGPDGKMRPAVYSISIHVDPLDPQRPLSLTHHPELSAIDVHKIGSFVRGDCLSIENLLTRTIIIRAEAILMDIKRELLPLSPGPIVTSEIPLCLSVPILWPCYTHELLYLRVDSAQGHLRASFATESIKGPQLLRELEMAFNRPSCRRVNFDHGSATDYRAGTRGMRSLAGDDARWQARLVDIFARLRCLLGQWRISSVHHNRPVRDSLPIAVPTDKSLDLPYTELLERAQQGRVALSYIKLFPNDDHYLVCEITPTPSLSVDYQYYMMKCVSMPVTVTDFHVPSGGRWLTYNPNHVADSSGAVSSPSVVLRITHFLPFNGNVLAPSIKSTFSCRQQQQPPAKIRKRRLLGLRGRRQPVVELLVPFHTAWTHSLWKRGAVSPHDGLFVALDARTMLVSAACAGCVGGKWDEAVFTCDSRTFRVTPRRRNEKSRFILIREEQERRSQTPSVRHAVKGVSHRGIVRANVRLKCSLQEGAVQSQHGRMRQRLKRVRVLLDHLPEGASDVKRRCLERLDPRARAMVESFDVSRESQSSDADFEPLPDLLRLLSDLEDDVIASELTFKLTENGIVHDGVNNNAQSGILTVDVRSIPTSRLPTWAQAGCESLRQHTKRVLLISSTKAYASSPTAAAAMRSWRLNIAFSGLPGERCTNGGNLLYQSEEVHVNSTAELAAFVALVVREWESLCRMFAICEPVLRNPACLPRDVSLKAFDAKSLVLAYGPGKHYLAELSIDSRHQCVLRLGVHPGPSTVKRQQDDSPEELLKRDLFENPHCIIREHLEYLLNGHKSVSRLCNTLSSTLPFVVAMEVVRKPTVMTNPNKVLQALFDFKMLPSCQSVKVQISVFLNTPPQSSSVAASARPLRSMALIALSCFDLALVYRGTLCMRFRLEQKVTPGGATADVVHISDGCQNHGQPVRPGGISSEIYPVQGFVQLPAFQQFLASIQRTLRAESEGEDSLGCVSVPQLAQLLTPGRGSPSPLECYLSASLIFHASFQAVNTLRWQVPSAPVAQAGEFASKVPDSGLEVRLKLHAEEPSKPEGFLPRWRLGLMVTPDPLTCPAERSAELSGRIGEFFQRRVCNLSPQAAAITSFFRLLSLPAATLHDLVSNVFAWDLEGGSSAPNSPFIRVCLVSVSSPHFPEPAVVLRAPTTLSMQLIVSSRPPQHHHDQSSVGSRSPSTEMIWLTYDWSKNHVAFVPGSASKRLQNYDDFINQRFMATRACTLVQLISHIRQMPPLSSDVAPVASVVMRVPAGPGTTLPQHSMQ
Length1402
PositionTail
OrganismMesocestoides corti
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Cestoda> Eucestoda> Cyclophyllidea> Mesocestoididae> Mesocestoides.
Aromaticity0.07
Grand average of hydropathy-0.151
Instability index57.99
Isoelectric point9.18
Molecular weight156376.25
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07121
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     225.19|      72|      90|    1192|    1280|       1
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 1195- 1271 (117.62/67.01)	LTCPAERSAEL..SGRIGEFF..QRRVCNLSPQAAAItsffrLLSLPAATLH.DLVSNVFAWDLEGGSSAPNSPFI..RVC.LVS
 1284- 1363 (107.57/60.23)	LRAPTTLSMQLivSSRPPQHHhdQSSVGSRSPSTEMI.....WLTYDWSKNHvAFVPGSASKRLQNYDDFINQRFMatRACtLVQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     700.71|     229|     830|      52|     318|       2
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   52-  318 (347.11/250.35)	IHPRQTRFLVQQAQS..RILYQSFDKRPPLV...HLYDMLHAFATSLQLdvlyeqAQRLRSrrpTDPF..NIECYRPGQLlkviywrgLTNCN..YQAVMgpDGKMRPAVYSISIHVDPL...DPQ........RPLSLTHHPELSAIDVHKIgsfVRGD.CLSIEnLLTRTIIIRAEAILMDI....KRELLPLSPGPIvTSEI.PLCLSVPIlwPCYTHellYLrvDSAQGHLRASFATESIKG....PQLLRELEMAFNRPSCRRVNFdhGSATDYRAGTRGMRSLagddaRWQ
  884- 1142 (353.60/180.47)	VHPGPSTVKRQQDDSpeELLKRDLFENPHCIireHLEYLLNGHKSVSRL......CNTLSS...TLPFvvAMEVVRKPTV........MTNPNkvLQALF..DFKMLPSCQSVKVQISVFlntPPQsssvaasaRPLRSMALIALSCFDLALV...YRGTlCMRFR.LEQKVTPGGATADVVHIsdgcQNHGQPVRPGGI.SSEIyPVQGFVQL..PAFQQ...FL..ASIQRTLRAESEGEDSLGcvsvPQLAQLLTPGRGSPSPLECYL..SASLIFHASFQAVNTL.....RWQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07121 with Med14 domain of Kingdom Metazoa
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