<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07116

Description Uncharacterized protein
SequenceMCFSYVLIYHDKSRTLVASEGGWAAAARKHQASMREYCNVVITFQKELLKNKTGIFPTFLERTAVGSIVELRYGVLFEKQIVFTQKLLMVENAGVIEQILFVAPHEEWTFYTDLGEKRVDLAKSSQYIVYQKLTTQANIHLMQTINTQEIRWTPQTLHQLSSAFGKLQQVFDTTCRNCKSEGEWAAAARKHQASMREYCNVVITLRNRVTRLHNLLFHSQPPSRETWHAYFRQVDRVDKDLRDCFDNLESHAKGLPNQLPQIEPLNHLRAVFQEEQLDVQVVETVESMIDCENWNEGNFQTYMYLGEFLRLQRRRPSCIVPRPLSCSHWATGMSPHAQFETAFAQFQKELLKNKTGIFPTFLERTAVGSIVELRYGVLFEKQIVFTQKLLMVENAGVIEQILFVAPHEEWTFYTDLGEKRVDLAKSSQYIVYQKLTTQANIHLMQTINTQEIRWTPQTLHQLSSAFGKLQQVFDTTCRNCK
Length481
PositionTail
OrganismHaemonchus placei (Barber's pole worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Trichostrongyloidea> Haemonchidae> Haemonchus.
Aromaticity0.11
Grand average of hydropathy-0.314
Instability index40.87
Isoelectric point8.21
Molecular weight55879.40
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07116
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     280.10|      42|      43|      45|      87|       1
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   45-   86 (77.88/47.10)	QKELLKNKTGIFPTFL......ERTAVGSIVELRYGVLFEKQIVFTQK
   88-  132 (62.17/38.55)	...LMVENAGVIEQILfvapheEWTFYTDLGEKRVDLAKSSQYIVYQK
  347-  388 (77.88/47.10)	QKELLKNKTGIFPTFL......ERTAVGSIVELRYGVLFEKQIVFTQK
  390-  434 (62.17/43.99)	...LMVENAGVIEQILfvapheEWTFYTDLGEKRVDLAKSSQYIVYQK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     255.63|      47|     300|     133|     179|       2
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  133-  179 (98.56/55.99)	LTTQANIHLMQTINTQEIRWTPQTLHQLSSAFGKLQQVFDTTCRNCK
  208-  247 (58.52/30.70)	RVTRLHNLLFHSQPPSRETW.HAYFRQVDRVDKDLRDCFDN......
  435-  481 (98.56/55.99)	LTTQANIHLMQTINTQEIRWTPQTLHQLSSAFGKLQQVFDTTCRNCK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     112.78|      26|     159|      19|      44|       3
---------------------------------------------------------------------------
   19-   44 (56.92/37.42)	SEGGWAAAARKHQASMREYCNVVITF
  180-  205 (55.85/36.60)	SEGEWAAAARKHQASMREYCNVVITL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07116 with Med27 domain of Kingdom Metazoa
Unable to open file!