<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07114

Description Uncharacterized protein
SequenceMALYCSPQHKPTDLIGFVIDIFLESVAACKNEGVLLRLMWSLDRGIEHGIFTPQHIAEALLSRRELVPENQLFFRAVFTFLLKLVFYLDYKSNRMVFTKSIDKTYNHIPSSSGIPFRNPAIELVQILLCREINLLPALFTMYELRGEKSSRPSKLIEAEVEHFMSEFDYPLRILYSYNELNMVPIAGITQGKHPSFRLESELTLSILRQPILYPPAFKSRQLGLTCDLLGQLRCTQLASSLLACEERQTMGPNQTPMGQAVSDLIFVFMGVIETEKNTKWAVRIFSHLANLVISFILDRVVRLNDIISNLNSKASFTIWPISRHFVMWFTLVCMSGFVGSNKLTDFVSCLHLFDQLFPEANELDNDAVKRLEKIKADRPEFWGSEKHQLITTKTLEALGTGDPDLRFLLFISEHLITKSSDLSADDGQMAENGAEDHSSSCSSNDLEITRKSERGVSVDIPLKDLPTNVLVMFDTAPTKKAKLEGEELVNTEDKEEDLTHMVAACACIWEIILQMNSEESMGRGVKDCHLPRPLPPLLHPLRTQIATWLENLREACSGISTVTEIGDTSADVETQQVVHALSWLEFIITLNAYSPTENFSITRSVVASLWLPNNIPLPGIGGGLPLDNGPFTLPYGLTGAGRRIPLSNRLIQKMSIHLQLKFCNEMLQKLSEKTKPLSMETKNAHLTSPATLETFGRFLSYQMAKKIIPLREIYRRLLVESRSLHIPLYYDKSESDNNNDFYPPVRDDFYSLTFWFDLLGHRWIEALPVEHRLRYRDELFLRVNLNSHELIYALDWIIVRFSRRILTPDCVLYNIQSVPFQQQHFLHLQPPHHHQQIYSHSREVTSRVVLFSTLQAVCAYDLIDEEPLVRTKTDQLMAVRTETRAIFGEECSQFKLPAVIARLVDLLPPSAAQVLLPPLQSSSPPSQPPPIFPAEATMESSSNESSESLYFSLRERLLTSAFDIYKSLSSDSENDFKWAELNIQNERCLCTILIAIMKDKGAIPIFLLNNLLQMSPALMHTQVKVLCEFLVTQVCKFEEFDRRKLPPPDYIFSPSALCSATITFSVQYGIITLDRLLLYLFMRSNHSLIDVAAGHSIALFLITQCPQLIQAIQAVGEFAPESKNILSSRRWPDLLLLLHEILPEKQMIILPPSTRGRGGGQPAASSPLNSTPSAVILRRRPCQPVYYDHLVLRLIPILEIILTSFLDNPPPLLQLAQFCDIIAPLFRLHSYLFTAHPMSLCFLLLRSQFHHFSSSSSGSGGGAAIGTTTPTTPAGSSQQLVAWRNPTQVDKVACQLVLRSILHLHHQLAVRVNAKRECALVFGGEVSGLLSPPAWKTLDTLHNAALARGEPTDQASRDSDFIDCLRMVYGTDAEIRLASALTLSAEEAFPSDLELHILRLLQPVVAVTTNHGLSGVPSAWRDWRSEEAVNPQAAGIYAVAVELMALHPPSDTSRVSNAASCLLECLRKVPGSNDFQKWLNVTGALVSILPFVFRHNILCLTCTLINDPCFNDAELWPQTLLTLKIGTVPSLQPPKQLIKVFRFRRALSAQPTRLTIFREEKEAQETALRVSREDEASRWEVLGRPHASSVRFFDTILPAQLPQGENLPNHLFKAAVWHAIWSHVNFYENPTLLRRIFDEFLLKHINNEAKLLMAFSMVTPPLKALTNDKSAIVDLTVSLYKALQQVDEALAAKNIPLYHVNTIADLLYHIKYSYVGKAGQDEVQGLLLKMRPHLQACLKFIFSSSPVNPDGISLLNGYPKFEDREYRAALKPPALIEDEFF
Length1781
PositionTail
OrganismHymenolepis diminuta (Rat tapeworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Cestoda> Eucestoda> Cyclophyllidea> Hymenolepididae> Hymenolepis.
Aromaticity0.09
Grand average of hydropathy-0.017
Instability index55.83
Isoelectric point6.23
Molecular weight200788.65
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07114
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.00|      18|      36|    1461|    1478|       1
---------------------------------------------------------------------------
 1461- 1478 (35.91/22.36)	CLLECLRKVPGSNDFQKW
 1499- 1516 (37.10/23.35)	CLTCTLINDPCFNDAELW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.19|      22|     278|     951|     972|       2
---------------------------------------------------------------------------
  951-  972 (37.87/21.97)	FSLRERLLTSAFDIYKSLSSDS
 1238- 1259 (41.32/24.66)	MSLCFLLLRSQFHHFSSSSSGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.80|      15|     278|     298|     343|       4
---------------------------------------------------------------------------
  277-  297 (22.01/24.73)	NTK.....WAV.RIFshlanlVISFIL
  311-  331 (22.79/34.29)	NSKasftiWPIsRHF......VMWFTL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     161.61|      36|     278|     897|     932|       5
---------------------------------------------------------------------------
  897-  932 (62.88/36.51)	PAVIARLVDLLPPSAAQVLLP.........PLQSSSPPSQPPPIF
 1132- 1176 (49.99/27.23)	PDLLLLLHEILPEKQMIILPPstrgrgggqPAASSPLNSTPSAVI
 1184- 1213 (48.75/26.34)	PVYYDHLVLRLIP.ILEIIL..............TSFLDNPPPLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.18|      21|     146|    1575|    1609|       6
---------------------------------------------------------------------------
 1575- 1601 (24.77/43.59)	EASRWEVLgRPHassVRFFDTilPAQL
 1613- 1633 (40.41/17.95)	KAAVWHAI.WSH...VNFYEN..PTLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      25.00|       7|      37|     539|     550|       7
---------------------------------------------------------------------------
  539-  550 (10.09/18.51)	HPLrtqiaTWLE
  579-  585 (14.90/ 7.61)	HAL.....SWLE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.45|      38|     212|     810|     852|       8
---------------------------------------------------------------------------
  775-  819 (60.35/34.06)	YRDELFLRVN.LNSHELIYA....LDWIIVRFSrriltpdCVLYNIQSVP
  820-  867 (54.10/43.65)	FQQQHFLHLQpPHHHQQIYShsreVTSRVVLFS..tlqavCAYDLIDEEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     122.67|      40|     146|    1265|    1314|       9
---------------------------------------------------------------------------
 1271- 1314 (64.31/62.96)	TTPAGSSQQLVAWR........NP..TQVDKVACQLVlrsILHLHHQLAvRV.NA
 1408- 1458 (58.36/31.95)	TTNHGLSGVPSAWRdwrseeavNPqaAGIYAVAVELM...ALHPPSDTS.RVsNA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.56|      26|     667|     993|    1018|      13
---------------------------------------------------------------------------
  993- 1018 (44.90/32.27)	LIAIMKDKGAI...PIFLLNNLLQMSPAL
 1662- 1690 (36.66/24.86)	LKALTNDKSAIvdlTVSLYKALQQVDEAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.23|      16|     667|      70|      96|      14
---------------------------------------------------------------------------
   35-   50 (28.99/25.03)	LLRLMWSLDRGIEHGI
   81-   96 (27.24/ 8.21)	LLKLVFYLDYKSNRMV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.59|      11|      17|     615|     625|      22
---------------------------------------------------------------------------
  615-  625 (22.33/12.70)	IP..LPGIGGGLP
  633-  645 (16.27/ 7.07)	LPygLTGAGRRIP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07114 with Med23 domain of Kingdom Metazoa
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