<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07110

Description Uncharacterized protein
SequenceMSRKDVSITTGAVVSSECDLQGDIIVGTRTVIHPKARILARAGPIQIGESNLIEEQVEIVNDTPNTILIIGDFNVFEVGARVCSREVGNSNVFESKCYVGPQVRISNGCVIGAMCSLTAPEQLPENTMIYGEDVMDGQQFQMQPGGGPGRPPTQRNPQVMVSQMQQHRQQPQQYQQQSMMQQPPPQQESFAAYENPEGPIVPSLLADQQSFRGTDPFFGSQPRGNMMQEVFIQGLVSSGQKSLLLSRLRGICKDHSTFTDQEESYSAQGLPTSVTTGTSTFVNFRVRRTIQPNIREYVNRPVIRYLGAVESTDRVSRRSYLEASAHGSVGNFLKCLGFKQDFEFIAEGEIFVRGRAKALVYSVYEVVYQDMQMPIPTKGRNLVPNSLMVEVTAVGSPSDDTLQREVVELMELLHPLVIPGFIDHARLSMR
Length430
PositionHead
OrganismHymenolepis diminuta (Rat tapeworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Cestoda> Eucestoda> Cyclophyllidea> Hymenolepididae> Hymenolepis.
Aromaticity0.07
Grand average of hydropathy-0.299
Instability index42.07
Isoelectric point5.54
Molecular weight47666.62
Publications









Function






Annotated function


GO - Cellular Component
cytoplasm	GO:0005737	IEA:UniProtKB-KW
dynactin complex	GO:0005869	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07110
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     138.18|      31|      31|     126|     156|       1
---------------------------------------------------------------------------
   89-  124 (44.95/22.09)	NSNV..FESKCYVGPQVRISN.GCVIGamcslTAPEQLP
  126-  156 (58.00/30.58)	NTMI..YGEDVMDGQQFQMQP.GGGPG.....RPPTQRN
  158-  187 (35.23/15.76)	QVMVsqMQQHRQQPQQYQQQSmMQQP.......PPQQ..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.84|      29|      37|     203|     239|       2
---------------------------------------------------------------------------
  203-  239 (42.43/41.95)	SLLADQqsFRG..TD.PFFGSQprgnmmQEVF.IQGL...VSSG
  242-  277 (32.41/15.88)	SLLLSR..LRGicKDhSTFTDQ......EESYsAQGLptsVTTG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07110 with Med18 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NTMIYGEDVMDGQQFQMQPGGGPGRPPTQRNPQVMVSQMQQHRQQPQQYQQQSMMQQPPPQQESFAAYENPEGP
126
199










Molecular Recognition Features






MoRF SequenceStartStop




NANANA