<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07106

Description Uncharacterized protein
SequenceMYGSNEPSTSRSYGTPMYVAPPAQRPTRRTGVDIALESGLEWRVFKIENSGQEIYFRCGVKTLIFENCFFYRPPDYSERVAKLARRVDWRKLIGADATYDNPSMCERNLDEDEYSDTESVAPVELGIEDRQPPDAGPWHMVARNLFEALQQVNLLTDTLKVLKLPYLEALTVADSFEMQHNMQEVIQHSKHFQWVTKRKALTEAASVLEQSQKCRSKGSVAETEKEMFFDELKKVRENWRVRKTGDFVYGDIGYSIFGNKYDQKEMFDILRRSRSAITDVQGVQRQSCLQVRIPADLVRRSTLAVSIESDDIDSQKDLFALPENDLDYAKIDLEKAKEIYWEKALQWGQESLICRDIFRKLCNDAVLLKGRLAVVRGNVLIVSLFDDLLLRIELRNYPFEEGKLPVVGDPYLNRSLRQLFVLDQCTRWLRHQSFVTMPLTQLHESLDLRGPDAMAKNEIEARLGKRKDILIRFIDLAAHYVLQSRAALALEKFILRVSDPQVTWKWLRSTPFQSSIILTAVNRNYDHPGKFTFYIRIDADSFYITTKEGQRMDCWRDENMLISGVEVLVCNFMLNSVAHVATKLWQWQVLHANLNAIDADANPRPTLYMCNQSATRSLFIEFRPKNVPIVRVRKCKPEKLEKIESPEEFLTLNYNRLIGSSLCRKIDNLCSMLEN
Length675
PositionHead
OrganismEnterobius vermicularis (Human pinworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Oxyuridomorpha> Oxyuroidea> Oxyuridae> Enterobius.
Aromaticity0.09
Grand average of hydropathy-0.378
Instability index52.75
Isoelectric point7.11
Molecular weight78195.76
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07106
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.89|      27|      78|     416|     450|       1
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  424-  450 (51.56/47.84)	QCT.RWLRHQSF.VTMPLTQLHESLDLRG
  501-  529 (41.33/21.29)	QVTwKWLRSTPFqSSIILTAVNRNYDHPG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     176.82|      50|     284|      19|      69|       2
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   19-   69 (84.16/56.41)	VAPPAQRpTRRTGVDIALES...............GLEWRVFKIENSGQEIY....FRCGVKTLIFENCF
  238-  261 (31.31/14.44)	.....................................NWRVRK...TGDFVY....GDIGYS..IFGNKY
  291-  358 (61.35/35.52)	VRIPADL.VRRSTLAVSIESddidsqkdlfalpenDLDYAKIDLEK.AKEIYwekaLQWGQESLICRDIF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.89|      12|      36|     224|     236|       3
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  224-  236 (17.37/13.53)	EKEMfFDELKKVR
  263-  274 (22.51/12.21)	QKEM.FDILRRSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.95|      19|     264|     125|     155|       4
---------------------------------------------------------------------------
  125-  151 (24.06/41.63)	LGIEDrqppdagPWHMvARNLFEALQQ
  170-  188 (33.89/16.56)	LTVAD.......SFEM.QHNMQEVIQH
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07106 with Med17 domain of Kingdom Metazoa
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