<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07104

Description Uncharacterized protein
SequenceMEILFSGLKQHSHIHCSSKPFRCHVCDKAYTQFSNLCRHKRIHLEGWQCQFCSASLGSQSALIRHRSICEPQMTALSAFYKPIATQPPLLTVSSHYWSRLLQIASTQQQQQHQQQHQQQQQHQQQHQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHSQAVPISVPTIANALFPWKDDYHAINGSDGESSPGSSEQPSDPSPTEQKYSPHDSSDDGSLGDFELTPLDLSMKASGTGTAGGAAVTLLSTIPQTEDKATTNGEKKERNVESESDQVFAGSGNQKDGTGMEHENLIASTESSILPKNLGKLDLTPAVNPFSSTAFMQMLRRPFTYPIVPAPATTASRLNPYSHSSHHSAPPAPLLSKTARDRYTCKFCAKVFPRSANLTRHLRTHTGEQPYKVYRQLTDKCQYCDRSFSISSNLQRHVRNIHNKEKPFRCDRCDRCFGQQTNLDRHTKKHESSGALTIAAGALGVRREPLTTQIRTAAVALPFSAQSLFSQLTPSVQPIF
Length513
PositionTail
OrganismElaeophora elaphi
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Elaeophora.
Aromaticity0.06
Grand average of hydropathy-0.850
Instability index65.20
Isoelectric point8.92
Molecular weight57605.41
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07104
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     103.38|      16|      16|     127|     142|       1
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  107-  122 (38.03/11.49)	QQ..QQQHQQQHQQQQQH
  123-  140 (33.27/ 9.31)	QQqhQQQHQQQQQQQQQQ
  141-  157 (32.07/ 8.76)	QQ.qQQQQQQQQQQQQQQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     139.23|      22|      26|       5|      26|       2
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    5-   20 (22.37/10.09)	....................FSGLKQHSH.IHCSSKP
   21-   46 (34.26/19.39)	F........RCHVCdkaytqFSNLCRHKR.IHL..EG
  376-  403 (35.70/20.52)	Y........TCKFCakvfprSANLTRHLR.THTGEQP
  404-  440 (26.71/13.49)	YkvyrqltdKCQYCdrsfsiSSNLQRHVRnIHNKEKP
  441-  463 (20.19/ 8.38)	F........RCDRCdrcfgqQTNLDRHTK.KH.....
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.32|      16|      17|     215|     230|       3
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  194-  216 (20.61/ 9.18)	ESSpgsseqpSDPSPTEQKYSPH
  217-  232 (27.71/14.64)	DSS.......DDGSLGDFELTPL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.67|      11|      16|      52|      64|       4
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   52-   62 (18.29/13.31)	CSASLGSQSAL
   69-   79 (20.38/ 7.31)	CEPQMTALSAF
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.06|      17|      21|     260|     276|       6
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  260-  276 (27.42/18.72)	DK..ATTNGEKKERNVESE
  278-  296 (25.64/17.06)	DQvfAGSGNQKDGTGMEHE
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.36|      28|      42|     300|     327|       7
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  300-  327 (46.26/25.17)	ASTESSILPKNLGKLDLTPAVNPFSSTA
  345-  372 (49.10/27.11)	ATTASRLNPYSHSSHHSAPPAPLLSKTA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07104 with Med29 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QQQQQHQQQHQQQQQHQQQHQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHSQAVPISVPTIANALFPWKDDYHAINGSDGESSPGSSEQPSDPSPTEQKYSPHDSSDDGSLGDFELTPLDLSMKASGTGTAGGAAVTLLSTIPQTEDKATTNGEKKERNVESESDQVFAGSGNQKDGTGMEHENLIASTES
107
304










Molecular Recognition Features






MoRF SequenceStartStop




NANANA