<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07101

Description Uncharacterized protein
SequenceMEKESIVERQEQKPIMDNTQCNKYSLVDFNLEDVEEEIRLEKIRQTSVRFSWDNLSQLLRRNLMEKRFVLSADDKEDLMKAAADMRKHMPSDSDRDLSTHLRHLAESLLSDFQTHPGSYKIRNADFSLEITASADGQQITSCSVSWFGERAIEAQALRLYISRNRWDLVHTALTAMFHLVPSDLSRDEKIYCLRSLEYAEKDLLNMSGSVPSVFEQINGGILGLCKPRTESTPFTIYPFVEPVIFLDTTSGGIISPTDEQVLYDVEPYLQLCIVSSSTPNFFSDTSLFAHGEWRSAVSSRQLPAAFCLRFSRPIIFSSAAIKKLSKIASVPLNVEGSYNLYQYLLNENEECRDLFIRLPGCSTQHYILDNSMTCSQEDGILRQIPFAHLQDVVFLVSIIRTQLAHNAFFESLVRAHSRSACVDENFVDIRIASSYIDCFDLQFYLKRNLFIARVAVSPLNVSVSLECVINGAVLPESQHATAILAKSWSLAVMMRSVLRRGGAISLAALEKPFVMNENVDNNCDVKISQSWLFVPNITDNSTNYCKTEHEYVVDERINLNCSRDNNTLGRQSPLSLLALFKELEKIEELIPPQKPMNGAQQYTAPPRNEMLAPRTNRIHSENTMTINAFSVLDAICDMAASIDDGESNISEHSSHSSTVERCSPSTNDASQLFLHSKLNEFKSQRLRPQMPPQSPSPASERYRASQAGNFSQLSPLDIARQRLAVDFIQQAPMSNPTDVFEFDDPPRMNSVNSMGTSAQQFHFPEAGQSPYSFAAMQSARGPLSAQPTLKRRGRGRKAGNVGDRMLDPSRPVLDQNTGLMFRGMNISTRKPRGTSTARRPRRPRKAAHLPASPAHSHQFTMNRPMLQRSFSEMPVYPSQMPPVGLSQENRSEASEFDGTEESSDDETDPPPPVCTTTIPQSSTQLTASGNTLMPQTTTVGNLSSPSTSTTLSLANKSSTLNAPSCLSSVSSSGQATELAPPTSSSPTATNNNSIQSAALLGHKARKGSLEAVVGKLHCKTAPASSSSSTTSNPYLASDLYDDESEPVSKPSEPFPTKRDSPSISTSSPGARMSPNLTKMNVEQQGYGSELKIMIKLKQQASARPSTGPPQSSSGGVPSSMRLVGQPPSSSRSKEEKALLRQKQLKEKNRSAPDERARKAGKRERKGEVSSSSKKLKLDRPLNEQKTTTTVSPKVEFPHALAFASLKNFKIPKVMENEKCESPTPTTTTPAVATPSSSGAHLNIGQNSSCSTVQVVPPASLSLTTTATTAATTASSSSSSAGTSSIFPPKPKSILKSSAEPPPPPLFRGMGGMPPMLPGRRPLLPDPRNVMHHPPRPLVALPRMIPSVLSGANFMPPPSSSGRWMALAPQRQPSPRNSPSEQSASGLSDTTAAMSKMQDSPTEALKIVADEE
Length1411
PositionMiddle
OrganismElaeophora elaphi
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Elaeophora.
Aromaticity0.06
Grand average of hydropathy-0.471
Instability index62.15
Isoelectric point8.37
Molecular weight154729.01
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07101
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.70|      39|      90|      67|     106|       1
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   67-  106 (65.34/53.05)	RFVLSaDDKEDLMKAAADMRKHM.PSDSDRDLSTH.LRHL..AE
  158-  200 (56.36/40.15)	RLYIS.RNRWDLVHTALTAMFHLvPSDLSRDEKIYcLRSLeyAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.84|      22|      92|     692|     715|       2
---------------------------------------------------------------------------
  692-  713 (38.64/13.82)	PQSPSPASERYRASQA....GNFSQL
  981- 1006 (26.20/ 8.18)	PTSSSPTATNNNSIQSaallGHKARK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     434.13|      71|     117|     906|     978|       3
---------------------------------------------------------------------------
  853-  911 (86.37/29.19)	.......PAHSHQFTMNRPML.............QRSFSEMPV..YPSQMPPVGLSQENRS...EASEFDGTEESSDDET...............DPPP
  912-  980 (106.07/37.43)	PVCTTTIPQSSTQLTASGNTL.............MPQTTTVGN..LSSPSTSTTLSLANKSSTLNAPSCLSSVSSSGQATEL...............AP
 1015- 1090 (79.39/26.27)	KLHCKTAPASSSSSTTSNPYLasdlyddesepvsKPSEPFPTK..RDSPSISTSSPGARMSPNLTK....MNVEQQGYGSEL.................
 1224- 1302 (72.72/23.49)	P..TTTTPAVATPSS.SGAHL.........nigqNSSCSTVQV....VPPASLSLTTTATTAATTASSS....SSSAGTSSIfppkpksilkssaEPPP
 1303- 1368 (89.57/30.53)	PPLFRGMGGMP.......PML..........pgrRPLLPDPRNvmHHPPRPLVALP.RMIPSVLSGANFMPPPSSSGRWMAL...............AP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.60|      29|     119|     358|     390|       4
---------------------------------------------------------------------------
  361-  389 (56.18/37.16)	CSTQH.YILDN..SMTCSQEDGIL.RQIPFAHL
  545-  577 (40.42/14.30)	CKTEHeYVVDEriNLNCSRDNNTLgRQSPLSLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.42|      30|     383|     274|     303|       7
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  274-  303 (53.30/29.24)	VSSSTPNFFSDTSLFAHG...EWRSAVSSRQLP
  659-  691 (49.11/26.36)	VERCSPSTNDASQLFLHSklnEFKSQRLRPQMP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.90|      14|      94|     422|     436|       9
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  422-  436 (19.75/19.98)	VDENfVDIRIASSYI
  519-  532 (27.15/20.65)	VDNN.CDVKISQSWL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07101 with Med1 domain of Kingdom Metazoa
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